Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1818 and GFF1819 are separated by 71 nucleotides GFF1819 and GFF1820 are separated by 219 nucleotides GFF1820 and GFF1821 are separated by 110 nucleotides
GFF1818 - D-3-phosphoglycerate dehydrogenase, at 474,038 to 475,624
GFF1818
GFF1819 - Putative membrane-bound redox modulator Alx, at 475,696 to 476,688
GFF1819
GFF1820 - hypothetical protein, at 476,908 to 477,129
GFF1820
GFF1821 - Hydrogen peroxide-inducible genes activator, at 477,240 to 478,160
GFF1821
Position (kb) 475
476
477 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 474.724 kb on + strand, within GFF1818 at 474.724 kb on + strand, within GFF1818 at 474.724 kb on + strand, within GFF1818 at 474.947 kb on + strand, within GFF1818 at 474.947 kb on + strand, within GFF1818 at 474.948 kb on - strand, within GFF1818 at 475.103 kb on + strand, within GFF1818 at 475.103 kb on + strand, within GFF1818 at 475.103 kb on + strand, within GFF1818 at 475.104 kb on - strand, within GFF1818 at 475.268 kb on + strand, within GFF1818 at 475.268 kb on + strand, within GFF1818 at 475.409 kb on + strand, within GFF1818 at 475.410 kb on - strand, within GFF1818 at 475.639 kb on + strand at 475.640 kb on - strand at 475.868 kb on + strand, within GFF1819 at 475.868 kb on + strand, within GFF1819 at 475.964 kb on + strand, within GFF1819 at 475.964 kb on + strand, within GFF1819 at 475.965 kb on - strand, within GFF1819 at 475.965 kb on - strand, within GFF1819 at 475.965 kb on - strand, within GFF1819 at 476.154 kb on + strand, within GFF1819 at 476.267 kb on + strand, within GFF1819 at 476.267 kb on + strand, within GFF1819 at 476.268 kb on - strand, within GFF1819 at 476.268 kb on - strand, within GFF1819 at 476.357 kb on + strand, within GFF1819 at 476.358 kb on - strand, within GFF1819 at 476.445 kb on + strand, within GFF1819 at 476.450 kb on + strand, within GFF1819 at 476.519 kb on + strand, within GFF1819 at 476.520 kb on - strand, within GFF1819 at 476.520 kb on - strand, within GFF1819 at 476.520 kb on - strand, within GFF1819 at 476.909 kb on + strand at 477.274 kb on - strand at 477.274 kb on - strand at 477.561 kb on + strand, within GFF1821 at 477.561 kb on + strand, within GFF1821 at 477.561 kb on + strand, within GFF1821 at 477.616 kb on + strand, within GFF1821 at 477.616 kb on + strand, within GFF1821 at 477.618 kb on + strand, within GFF1821 at 477.618 kb on + strand, within GFF1821 at 477.618 kb on + strand, within GFF1821 at 477.618 kb on + strand, within GFF1821 at 477.618 kb on + strand, within GFF1821 at 477.619 kb on - strand, within GFF1821 at 477.619 kb on - strand, within GFF1821
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 474,724 + GFF1818 0.43 +1.8 474,724 + GFF1818 0.43 -1.3 474,724 + GFF1818 0.43 -0.1 474,947 + GFF1818 0.57 +0.8 474,947 + GFF1818 0.57 +0.3 474,948 - GFF1818 0.57 -0.7 475,103 + GFF1818 0.67 -0.3 475,103 + GFF1818 0.67 -0.8 475,103 + GFF1818 0.67 -3.3 475,104 - GFF1818 0.67 +0.2 475,268 + GFF1818 0.78 +0.6 475,268 + GFF1818 0.78 -0.4 475,409 + GFF1818 0.86 -0.3 475,410 - GFF1818 0.86 -0.1 475,639 + +0.1 475,640 - +1.1 475,868 + GFF1819 0.17 -0.9 475,868 + GFF1819 0.17 -0.6 475,964 + GFF1819 0.27 -1.1 475,964 + GFF1819 0.27 +1.0 475,965 - GFF1819 0.27 +0.1 475,965 - GFF1819 0.27 -0.5 475,965 - GFF1819 0.27 -0.4 476,154 + GFF1819 0.46 -0.8 476,267 + GFF1819 0.58 +0.4 476,267 + GFF1819 0.58 -0.2 476,268 - GFF1819 0.58 +0.2 476,268 - GFF1819 0.58 -0.6 476,357 + GFF1819 0.67 +0.7 476,358 - GFF1819 0.67 +0.7 476,445 + GFF1819 0.75 +0.0 476,450 + GFF1819 0.76 -0.8 476,519 + GFF1819 0.83 -0.9 476,520 - GFF1819 0.83 +0.0 476,520 - GFF1819 0.83 +0.3 476,520 - GFF1819 0.83 +0.1 476,909 + -1.8 477,274 - -0.8 477,274 - +0.5 477,561 + GFF1821 0.35 +0.3 477,561 + GFF1821 0.35 +0.2 477,561 + GFF1821 0.35 -0.7 477,616 + GFF1821 0.41 -0.8 477,616 + GFF1821 0.41 -0.0 477,618 + GFF1821 0.41 -0.7 477,618 + GFF1821 0.41 -0.8 477,618 + GFF1821 0.41 -0.0 477,618 + GFF1821 0.41 -0.4 477,618 + GFF1821 0.41 -0.4 477,619 - GFF1821 0.41 +0.1 477,619 - GFF1821 0.41 +0.1
Or see this region's nucleotide sequence