Strain Fitness in Xanthobacter sp. DMC5 around GFF1811

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1810 and GFF1811 are separated by 274 nucleotidesGFF1811 and GFF1812 are separated by 113 nucleotides GFF1810 - Histidine--tRNA ligase, at 464,174 to 465,700 GFF1810 GFF1811 - Putative cation/proton antiporter YbaL, at 465,975 to 467,825 GFF1811 GFF1812 - putative periplasmic iron-binding protein, at 467,939 to 468,862 GFF1812 Position (kb) 465 466 467 468Strain fitness (log2 ratio) -1 0 1at 465.753 kb on - strandat 466.010 kb on - strandat 466.662 kb on - strand, within GFF1811at 467.393 kb on + strand, within GFF1811at 467.393 kb on + strand, within GFF1811at 467.394 kb on - strand, within GFF1811at 467.394 kb on - strand, within GFF1811at 467.394 kb on - strand, within GFF1811at 467.681 kb on + strandat 467.824 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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465,753 - -0.5
466,010 - +0.7
466,662 - GFF1811 0.37 +0.4
467,393 + GFF1811 0.77 +0.4
467,393 + GFF1811 0.77 +0.1
467,394 - GFF1811 0.77 -0.1
467,394 - GFF1811 0.77 -0.2
467,394 - GFF1811 0.77 -1.5
467,681 + +0.9
467,824 - -0.1

Or see this region's nucleotide sequence