Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1800 and GFF1801 are separated by 142 nucleotides GFF1801 and GFF1802 are separated by 51 nucleotides
GFF1800 - hypothetical protein, at 452,295 to 453,518
GFF1800
GFF1801 - HTH-type transcriptional regulator DmlR, at 453,661 to 454,575
GFF1801
GFF1802 - Uric acid transporter UacT, at 454,627 to 456,018
GFF1802
Position (kb) 453
454
455 Strain fitness (log2 ratio) -2
-1
0
1 at 452.714 kb on - strand, within GFF1800 at 452.770 kb on + strand, within GFF1800 at 452.783 kb on - strand, within GFF1800 at 452.836 kb on + strand, within GFF1800 at 452.875 kb on + strand, within GFF1800 at 452.876 kb on - strand, within GFF1800 at 452.878 kb on + strand, within GFF1800 at 453.025 kb on + strand, within GFF1800 at 453.065 kb on + strand, within GFF1800 at 453.065 kb on + strand, within GFF1800 at 453.065 kb on + strand, within GFF1800 at 453.066 kb on - strand, within GFF1800 at 453.066 kb on - strand, within GFF1800 at 453.115 kb on + strand, within GFF1800 at 453.116 kb on - strand, within GFF1800 at 453.220 kb on + strand, within GFF1800 at 453.221 kb on - strand, within GFF1800 at 453.221 kb on - strand, within GFF1800 at 453.224 kb on - strand, within GFF1800 at 453.265 kb on + strand, within GFF1800 at 453.322 kb on + strand, within GFF1800 at 453.323 kb on - strand, within GFF1800 at 453.323 kb on - strand, within GFF1800 at 453.337 kb on + strand, within GFF1800 at 453.338 kb on - strand, within GFF1800 at 453.430 kb on + strand at 453.431 kb on - strand at 453.613 kb on - strand at 454.032 kb on + strand, within GFF1801 at 454.032 kb on + strand, within GFF1801 at 454.032 kb on + strand, within GFF1801 at 454.033 kb on - strand, within GFF1801 at 454.528 kb on + strand at 454.529 kb on - strand at 454.529 kb on - strand at 455.075 kb on + strand, within GFF1802 at 455.081 kb on + strand, within GFF1802 at 455.082 kb on - strand, within GFF1802
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 452,714 - GFF1800 0.34 +0.3 452,770 + GFF1800 0.39 -0.8 452,783 - GFF1800 0.40 +0.1 452,836 + GFF1800 0.44 -1.0 452,875 + GFF1800 0.47 -0.9 452,876 - GFF1800 0.47 +0.1 452,878 + GFF1800 0.48 +0.2 453,025 + GFF1800 0.60 -0.1 453,065 + GFF1800 0.63 +0.4 453,065 + GFF1800 0.63 +0.6 453,065 + GFF1800 0.63 +1.0 453,066 - GFF1800 0.63 -0.5 453,066 - GFF1800 0.63 +0.3 453,115 + GFF1800 0.67 -0.4 453,116 - GFF1800 0.67 +0.5 453,220 + GFF1800 0.76 +0.9 453,221 - GFF1800 0.76 +0.2 453,221 - GFF1800 0.76 +0.1 453,224 - GFF1800 0.76 +0.0 453,265 + GFF1800 0.79 -0.0 453,322 + GFF1800 0.84 +0.0 453,323 - GFF1800 0.84 -0.0 453,323 - GFF1800 0.84 -0.2 453,337 + GFF1800 0.85 +1.0 453,338 - GFF1800 0.85 -0.2 453,430 + +0.1 453,431 - -1.8 453,613 - +0.1 454,032 + GFF1801 0.41 -0.2 454,032 + GFF1801 0.41 -1.6 454,032 + GFF1801 0.41 +0.6 454,033 - GFF1801 0.41 -0.9 454,528 + +0.0 454,529 - -0.5 454,529 - +1.4 455,075 + GFF1802 0.32 +0.1 455,081 + GFF1802 0.33 -0.5 455,082 - GFF1802 0.33 +0.1
Or see this region's nucleotide sequence