Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1779 and GFF1780 are separated by 5 nucleotides GFF1780 and GFF1781 are separated by 59 nucleotides GFF1781 and GFF1782 are separated by 28 nucleotides GFF1782 and GFF1783 are separated by 4 nucleotides GFF1783 and GFF1784 overlap by 4 nucleotides
GFF1779 - Cytochrome c-type biogenesis protein CcmF, at 429,259 to 431,247
GFF1779
GFF1780 - hypothetical protein, at 431,253 to 431,747
GFF1780
GFF1781 - Dual-specificity RNA methyltransferase RlmN, at 431,807 to 433,060
GFF1781
GFF1782 - hypothetical protein, at 433,089 to 433,481
GFF1782
GFF1783 - hypothetical protein, at 433,486 to 434,022
GFF1783
GFF1784 - hypothetical protein, at 434,019 to 434,489
GFF1784
Position (kb) 431
432
433
434 Strain fitness (log2 ratio) -1
0
1 at 431.804 kb on + strand at 431.804 kb on + strand at 431.804 kb on + strand at 431.804 kb on + strand at 431.805 kb on - strand at 431.805 kb on - strand at 432.089 kb on + strand, within GFF1781 at 432.090 kb on - strand, within GFF1781 at 432.139 kb on + strand, within GFF1781 at 432.210 kb on - strand, within GFF1781 at 432.467 kb on + strand, within GFF1781 at 432.467 kb on + strand, within GFF1781 at 432.468 kb on - strand, within GFF1781 at 432.468 kb on - strand, within GFF1781 at 432.468 kb on - strand, within GFF1781 at 432.473 kb on + strand, within GFF1781 at 432.474 kb on - strand, within GFF1781 at 432.674 kb on + strand, within GFF1781 at 432.674 kb on + strand, within GFF1781 at 432.675 kb on - strand, within GFF1781 at 432.750 kb on - strand, within GFF1781 at 432.869 kb on + strand, within GFF1781 at 432.869 kb on + strand, within GFF1781 at 433.058 kb on + strand at 433.143 kb on + strand, within GFF1782 at 433.144 kb on - strand, within GFF1782 at 433.144 kb on - strand, within GFF1782 at 433.212 kb on + strand, within GFF1782 at 433.213 kb on - strand, within GFF1782 at 433.213 kb on - strand, within GFF1782 at 433.213 kb on - strand, within GFF1782 at 433.213 kb on - strand, within GFF1782 at 433.407 kb on + strand, within GFF1782 at 433.408 kb on - strand, within GFF1782 at 433.408 kb on - strand, within GFF1782 at 433.408 kb on - strand, within GFF1782 at 433.538 kb on - strand at 433.776 kb on - strand, within GFF1783 at 433.776 kb on - strand, within GFF1783 at 433.849 kb on + strand, within GFF1783 at 433.849 kb on + strand, within GFF1783 at 433.850 kb on - strand, within GFF1783 at 433.850 kb on - strand, within GFF1783 at 433.885 kb on + strand, within GFF1783 at 433.885 kb on + strand, within GFF1783 at 433.885 kb on + strand, within GFF1783 at 433.928 kb on + strand, within GFF1783
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 431,804 + -1.5 431,804 + +0.9 431,804 + -0.1 431,804 + -0.0 431,805 - -1.4 431,805 - +0.1 432,089 + GFF1781 0.22 +0.1 432,090 - GFF1781 0.23 -0.4 432,139 + GFF1781 0.26 -0.3 432,210 - GFF1781 0.32 -0.4 432,467 + GFF1781 0.53 -0.3 432,467 + GFF1781 0.53 -0.7 432,468 - GFF1781 0.53 +0.7 432,468 - GFF1781 0.53 -0.7 432,468 - GFF1781 0.53 +0.7 432,473 + GFF1781 0.53 -0.7 432,474 - GFF1781 0.53 -1.1 432,674 + GFF1781 0.69 +0.3 432,674 + GFF1781 0.69 -0.4 432,675 - GFF1781 0.69 -1.4 432,750 - GFF1781 0.75 -0.7 432,869 + GFF1781 0.85 -0.4 432,869 + GFF1781 0.85 -0.1 433,058 + +0.0 433,143 + GFF1782 0.14 +0.5 433,144 - GFF1782 0.14 -0.2 433,144 - GFF1782 0.14 +0.2 433,212 + GFF1782 0.31 +0.3 433,213 - GFF1782 0.32 +1.1 433,213 - GFF1782 0.32 +0.1 433,213 - GFF1782 0.32 -0.0 433,213 - GFF1782 0.32 +0.3 433,407 + GFF1782 0.81 +0.5 433,408 - GFF1782 0.81 -0.2 433,408 - GFF1782 0.81 -1.5 433,408 - GFF1782 0.81 -0.6 433,538 - +0.7 433,776 - GFF1783 0.54 -0.4 433,776 - GFF1783 0.54 +0.7 433,849 + GFF1783 0.68 -0.9 433,849 + GFF1783 0.68 +0.2 433,850 - GFF1783 0.68 -0.2 433,850 - GFF1783 0.68 +0.4 433,885 + GFF1783 0.74 +1.0 433,885 + GFF1783 0.74 +0.1 433,885 + GFF1783 0.74 -0.7 433,928 + GFF1783 0.82 -0.2
Or see this region's nucleotide sequence