Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1759 and GFF1760 are separated by 71 nucleotides GFF1760 and GFF1761 are separated by 65 nucleotides
GFF1759 - hypothetical protein, at 408,216 to 410,783
GFF1759
GFF1760 - Glucans biosynthesis glucosyltransferase H, at 410,855 to 412,687
GFF1760
GFF1761 - hypothetical protein, at 412,753 to 413,763
GFF1761
Position (kb) 410
411
412
413 Strain fitness (log2 ratio) -2
-1
0
1 at 409.911 kb on + strand, within GFF1759 at 409.923 kb on + strand, within GFF1759 at 409.923 kb on + strand, within GFF1759 at 409.941 kb on + strand, within GFF1759 at 409.941 kb on + strand, within GFF1759 at 409.942 kb on - strand, within GFF1759 at 410.161 kb on - strand, within GFF1759 at 410.161 kb on - strand, within GFF1759 at 410.161 kb on - strand, within GFF1759 at 410.161 kb on - strand, within GFF1759 at 410.245 kb on - strand, within GFF1759 at 410.245 kb on - strand, within GFF1759 at 410.304 kb on + strand, within GFF1759 at 410.304 kb on + strand, within GFF1759 at 410.305 kb on - strand, within GFF1759 at 410.305 kb on - strand, within GFF1759 at 410.556 kb on - strand at 410.604 kb on + strand at 411.012 kb on + strand at 411.012 kb on + strand at 411.012 kb on + strand at 411.012 kb on + strand at 411.013 kb on - strand at 411.013 kb on - strand at 411.382 kb on - strand, within GFF1760 at 411.408 kb on + strand, within GFF1760 at 411.564 kb on + strand, within GFF1760 at 411.636 kb on + strand, within GFF1760 at 411.636 kb on + strand, within GFF1760 at 411.855 kb on + strand, within GFF1760 at 411.855 kb on + strand, within GFF1760 at 411.855 kb on + strand, within GFF1760 at 411.856 kb on - strand, within GFF1760 at 411.856 kb on - strand, within GFF1760 at 411.856 kb on - strand, within GFF1760 at 412.039 kb on - strand, within GFF1760 at 412.113 kb on + strand, within GFF1760 at 412.113 kb on + strand, within GFF1760 at 412.117 kb on - strand, within GFF1760 at 412.407 kb on + strand, within GFF1760 at 412.622 kb on - strand at 412.691 kb on + strand at 412.691 kb on + strand at 412.691 kb on + strand at 412.692 kb on - strand at 412.692 kb on - strand at 412.692 kb on - strand at 412.737 kb on + strand at 412.737 kb on - strand at 412.810 kb on + strand at 412.810 kb on + strand at 412.810 kb on + strand at 412.810 kb on + strand at 412.891 kb on + strand, within GFF1761 at 412.891 kb on + strand, within GFF1761 at 412.892 kb on - strand, within GFF1761 at 412.893 kb on + strand, within GFF1761 at 412.894 kb on - strand, within GFF1761 at 413.269 kb on + strand, within GFF1761 at 413.509 kb on + strand, within GFF1761 at 413.684 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 409,911 + GFF1759 0.66 -1.9 409,923 + GFF1759 0.66 +0.2 409,923 + GFF1759 0.66 -0.3 409,941 + GFF1759 0.67 -0.1 409,941 + GFF1759 0.67 +0.1 409,942 - GFF1759 0.67 +0.7 410,161 - GFF1759 0.76 -0.8 410,161 - GFF1759 0.76 +0.5 410,161 - GFF1759 0.76 -0.1 410,161 - GFF1759 0.76 -0.2 410,245 - GFF1759 0.79 +0.4 410,245 - GFF1759 0.79 +1.2 410,304 + GFF1759 0.81 -2.2 410,304 + GFF1759 0.81 -0.5 410,305 - GFF1759 0.81 -0.6 410,305 - GFF1759 0.81 -0.1 410,556 - -0.1 410,604 + -0.1 411,012 + -0.7 411,012 + -1.0 411,012 + -0.4 411,012 + -0.5 411,013 - +0.2 411,013 - +0.3 411,382 - GFF1760 0.29 -0.2 411,408 + GFF1760 0.30 +0.1 411,564 + GFF1760 0.39 -0.7 411,636 + GFF1760 0.43 +0.8 411,636 + GFF1760 0.43 -0.8 411,855 + GFF1760 0.55 +0.2 411,855 + GFF1760 0.55 -0.4 411,855 + GFF1760 0.55 +0.7 411,856 - GFF1760 0.55 +0.8 411,856 - GFF1760 0.55 +0.5 411,856 - GFF1760 0.55 +0.3 412,039 - GFF1760 0.65 -0.6 412,113 + GFF1760 0.69 -0.7 412,113 + GFF1760 0.69 -1.8 412,117 - GFF1760 0.69 +0.1 412,407 + GFF1760 0.85 -0.2 412,622 - -0.3 412,691 + +0.2 412,691 + +0.4 412,691 + -0.2 412,692 - -0.2 412,692 - -0.2 412,692 - +0.7 412,737 + +0.3 412,737 - -0.0 412,810 + +0.9 412,810 + +1.0 412,810 + -1.8 412,810 + +0.4 412,891 + GFF1761 0.14 -0.6 412,891 + GFF1761 0.14 -0.9 412,892 - GFF1761 0.14 -0.1 412,893 + GFF1761 0.14 +0.2 412,894 - GFF1761 0.14 -0.6 413,269 + GFF1761 0.51 -1.8 413,509 + GFF1761 0.75 -1.0 413,684 - +0.9
Or see this region's nucleotide sequence