Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1725 and GFF1726 overlap by 4 nucleotides GFF1726 and GFF1727 are separated by 115 nucleotides GFF1727 and GFF1728 overlap by 1 nucleotides
GFF1725 - putative glycosyltransferase, at 374,299 to 375,333
GFF1725
GFF1726 - Chitooligosaccharide deacetylase, at 375,330 to 376,178
GFF1726
GFF1727 - putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B, at 376,294 to 376,938
GFF1727
GFF1728 - putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A, at 376,938 to 377,651
GFF1728
Position (kb) 375
376
377 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 374.332 kb on + strand at 374.333 kb on - strand at 374.428 kb on + strand, within GFF1725 at 374.429 kb on - strand, within GFF1725 at 374.429 kb on - strand, within GFF1725 at 374.524 kb on + strand, within GFF1725 at 374.525 kb on - strand, within GFF1725 at 374.732 kb on - strand, within GFF1725 at 374.732 kb on - strand, within GFF1725 at 374.732 kb on - strand, within GFF1725 at 375.047 kb on - strand, within GFF1725 at 375.172 kb on + strand, within GFF1725 at 375.173 kb on - strand, within GFF1725 at 375.173 kb on - strand, within GFF1725 at 375.215 kb on - strand, within GFF1725 at 375.217 kb on + strand, within GFF1725 at 375.217 kb on + strand, within GFF1725 at 375.218 kb on - strand, within GFF1725 at 375.218 kb on - strand, within GFF1725 at 375.360 kb on + strand at 375.360 kb on + strand at 375.600 kb on - strand, within GFF1726 at 376.080 kb on + strand, within GFF1726 at 376.080 kb on + strand, within GFF1726 at 376.694 kb on + strand, within GFF1727 at 376.694 kb on + strand, within GFF1727 at 376.695 kb on - strand, within GFF1727 at 376.695 kb on - strand, within GFF1727 at 376.767 kb on - strand, within GFF1727 at 376.877 kb on + strand at 377.020 kb on + strand, within GFF1728 at 377.020 kb on + strand, within GFF1728 at 377.020 kb on + strand, within GFF1728 at 377.020 kb on + strand, within GFF1728 at 377.020 kb on + strand, within GFF1728 at 377.021 kb on - strand, within GFF1728 at 377.021 kb on - strand, within GFF1728 at 377.147 kb on - strand, within GFF1728
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 374,332 + -1.5 374,333 - -1.0 374,428 + GFF1725 0.12 +0.1 374,429 - GFF1725 0.13 -0.5 374,429 - GFF1725 0.13 -0.4 374,524 + GFF1725 0.22 -0.3 374,525 - GFF1725 0.22 +1.3 374,732 - GFF1725 0.42 +0.5 374,732 - GFF1725 0.42 +1.5 374,732 - GFF1725 0.42 -0.1 375,047 - GFF1725 0.72 +0.4 375,172 + GFF1725 0.84 -1.1 375,173 - GFF1725 0.84 -0.3 375,173 - GFF1725 0.84 +0.5 375,215 - GFF1725 0.89 +0.1 375,217 + GFF1725 0.89 -3.2 375,217 + GFF1725 0.89 +0.2 375,218 - GFF1725 0.89 -0.3 375,218 - GFF1725 0.89 -0.1 375,360 + -0.5 375,360 + -0.6 375,600 - GFF1726 0.32 -0.5 376,080 + GFF1726 0.88 -0.1 376,080 + GFF1726 0.88 +0.8 376,694 + GFF1727 0.62 +0.5 376,694 + GFF1727 0.62 +0.6 376,695 - GFF1727 0.62 -0.2 376,695 - GFF1727 0.62 -0.2 376,767 - GFF1727 0.73 +0.5 376,877 + -0.5 377,020 + GFF1728 0.11 +0.7 377,020 + GFF1728 0.11 +0.0 377,020 + GFF1728 0.11 -0.1 377,020 + GFF1728 0.11 +0.0 377,020 + GFF1728 0.11 -0.1 377,021 - GFF1728 0.12 -0.4 377,021 - GFF1728 0.12 -0.2 377,147 - GFF1728 0.29 +0.8
Or see this region's nucleotide sequence