Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1699 and GFF1700 are separated by 123 nucleotides GFF1700 and GFF1701 are separated by 11 nucleotides GFF1701 and GFF1702 are separated by 44 nucleotides GFF1702 and GFF1703 are separated by 40 nucleotides
GFF1699 - Arginine biosynthesis bifunctional protein ArgJ, at 348,277 to 349,518
GFF1699
GFF1700 - hypothetical protein, at 349,642 to 350,070
GFF1700
GFF1701 - Acetylornithine deacetylase, at 350,082 to 351,254
GFF1701
GFF1702 - hypothetical protein, at 351,299 to 351,952
GFF1702
GFF1703 - Spermidine/putrescine import ATP-binding protein PotA, at 351,993 to 353,150
GFF1703
Position (kb) 350
351
352 Strain fitness (log2 ratio) -1
0
1 at 349.953 kb on - strand, within GFF1700 at 350.221 kb on - strand, within GFF1701 at 350.221 kb on - strand, within GFF1701 at 350.569 kb on + strand, within GFF1701 at 350.860 kb on + strand, within GFF1701 at 350.861 kb on - strand, within GFF1701 at 350.968 kb on + strand, within GFF1701 at 351.044 kb on + strand, within GFF1701 at 351.044 kb on + strand, within GFF1701 at 351.045 kb on - strand, within GFF1701 at 351.353 kb on - strand at 351.809 kb on + strand, within GFF1702 at 351.888 kb on - strand at 351.888 kb on - strand at 351.888 kb on - strand at 352.162 kb on + strand, within GFF1703 at 352.162 kb on + strand, within GFF1703 at 352.163 kb on - strand, within GFF1703 at 352.163 kb on - strand, within GFF1703
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 349,953 - GFF1700 0.72 +0.1 350,221 - GFF1701 0.12 -0.1 350,221 - GFF1701 0.12 +0.5 350,569 + GFF1701 0.42 -1.2 350,860 + GFF1701 0.66 -0.2 350,861 - GFF1701 0.66 -0.5 350,968 + GFF1701 0.76 -0.2 351,044 + GFF1701 0.82 -0.5 351,044 + GFF1701 0.82 +0.4 351,045 - GFF1701 0.82 +0.3 351,353 - +0.5 351,809 + GFF1702 0.78 +0.5 351,888 - -0.7 351,888 - +0.8 351,888 - +0.1 352,162 + GFF1703 0.15 +1.0 352,162 + GFF1703 0.15 +0.5 352,163 - GFF1703 0.15 +0.6 352,163 - GFF1703 0.15 -0.7
Or see this region's nucleotide sequence