Strain Fitness in Xanthobacter sp. DMC5 around GFF1650

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1649 and GFF1650 overlap by 4 nucleotidesGFF1650 and GFF1651 are separated by 399 nucleotides GFF1649 - Oligopeptide-binding protein AppA, at 300,115 to 302,016 GFF1649 GFF1650 - hypothetical protein, at 302,013 to 303,923 GFF1650 GFF1651 - hypothetical protein, at 304,323 to 304,613 GFF1651 Position (kb) 302 303 304Strain fitness (log2 ratio) -2 -1 0 1at 301.106 kb on + strand, within GFF1649at 301.107 kb on - strand, within GFF1649at 301.155 kb on - strand, within GFF1649at 301.160 kb on + strand, within GFF1649at 301.161 kb on - strand, within GFF1649at 301.218 kb on - strand, within GFF1649at 301.218 kb on - strand, within GFF1649at 301.235 kb on + strand, within GFF1649at 301.236 kb on - strand, within GFF1649at 301.236 kb on - strand, within GFF1649at 301.242 kb on + strand, within GFF1649at 301.242 kb on + strand, within GFF1649at 301.244 kb on + strand, within GFF1649at 301.244 kb on + strand, within GFF1649at 301.244 kb on + strand, within GFF1649at 301.244 kb on + strand, within GFF1649at 301.245 kb on - strand, within GFF1649at 301.245 kb on - strand, within GFF1649at 301.245 kb on - strand, within GFF1649at 301.245 kb on - strand, within GFF1649at 301.465 kb on + strand, within GFF1649at 301.465 kb on + strand, within GFF1649at 301.465 kb on + strand, within GFF1649at 301.466 kb on - strand, within GFF1649at 301.475 kb on + strand, within GFF1649at 301.574 kb on + strand, within GFF1649at 301.622 kb on + strand, within GFF1649at 301.622 kb on + strand, within GFF1649at 301.622 kb on + strand, within GFF1649at 301.622 kb on + strand, within GFF1649at 301.622 kb on + strand, within GFF1649at 301.623 kb on - strand, within GFF1649at 301.666 kb on + strand, within GFF1649at 301.667 kb on + strand, within GFF1649at 301.667 kb on + strand, within GFF1649at 301.668 kb on - strand, within GFF1649at 301.668 kb on - strand, within GFF1649at 301.668 kb on - strand, within GFF1649at 301.668 kb on - strand, within GFF1649at 301.668 kb on - strand, within GFF1649at 301.748 kb on + strand, within GFF1649at 301.748 kb on + strand, within GFF1649at 301.748 kb on + strand, within GFF1649at 301.748 kb on + strand, within GFF1649at 301.749 kb on - strand, within GFF1649at 301.749 kb on - strand, within GFF1649at 301.752 kb on - strand, within GFF1649at 301.808 kb on + strand, within GFF1649at 301.809 kb on - strand, within GFF1649at 301.809 kb on - strand, within GFF1649at 301.809 kb on - strand, within GFF1649at 301.835 kb on + strandat 301.836 kb on - strandat 302.142 kb on - strandat 302.144 kb on - strandat 302.240 kb on - strand, within GFF1650at 302.240 kb on - strand, within GFF1650at 302.240 kb on - strand, within GFF1650at 302.393 kb on - strand, within GFF1650at 302.420 kb on - strand, within GFF1650at 302.483 kb on - strand, within GFF1650at 302.581 kb on + strand, within GFF1650at 302.663 kb on - strand, within GFF1650at 302.663 kb on - strand, within GFF1650at 302.837 kb on - strand, within GFF1650at 302.837 kb on - strand, within GFF1650at 302.837 kb on - strand, within GFF1650at 302.837 kb on - strand, within GFF1650at 302.975 kb on - strand, within GFF1650at 303.074 kb on - strand, within GFF1650at 303.149 kb on - strand, within GFF1650at 303.188 kb on - strand, within GFF1650at 303.188 kb on - strand, within GFF1650at 303.388 kb on + strand, within GFF1650at 303.389 kb on - strand, within GFF1650at 303.391 kb on + strand, within GFF1650at 303.392 kb on - strand, within GFF1650at 303.392 kb on - strand, within GFF1650at 303.500 kb on - strand, within GFF1650at 303.500 kb on - strand, within GFF1650at 303.500 kb on - strand, within GFF1650at 303.527 kb on - strand, within GFF1650at 303.599 kb on - strand, within GFF1650at 303.599 kb on - strand, within GFF1650at 303.716 kb on - strand, within GFF1650at 303.742 kb on + strandat 303.743 kb on - strandat 303.743 kb on - strandat 303.961 kb on - strandat 303.969 kb on - strandat 304.079 kb on + strandat 304.080 kb on - strandat 304.342 kb on + strandat 304.343 kb on - strandat 304.463 kb on - strand, within GFF1651at 304.463 kb on - strand, within GFF1651at 304.463 kb on - strand, within GFF1651at 304.490 kb on + strand, within GFF1651at 304.490 kb on + strand, within GFF1651at 304.561 kb on + strand, within GFF1651at 304.561 kb on + strand, within GFF1651at 304.594 kb on + strandat 304.594 kb on + strandat 304.594 kb on + strandat 304.594 kb on + strandat 304.594 kb on + strandat 304.595 kb on - strandat 304.663 kb on + strandat 304.664 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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301,106 + GFF1649 0.52 +0.7
301,107 - GFF1649 0.52 +0.3
301,155 - GFF1649 0.55 +0.2
301,160 + GFF1649 0.55 -0.2
301,161 - GFF1649 0.55 +0.4
301,218 - GFF1649 0.58 -0.8
301,218 - GFF1649 0.58 +0.5
301,235 + GFF1649 0.59 -0.4
301,236 - GFF1649 0.59 +0.0
301,236 - GFF1649 0.59 -0.2
301,242 + GFF1649 0.59 +0.5
301,242 + GFF1649 0.59 -0.3
301,244 + GFF1649 0.59 +0.1
301,244 + GFF1649 0.59 -1.7
301,244 + GFF1649 0.59 +0.0
301,244 + GFF1649 0.59 -0.3
301,245 - GFF1649 0.59 +0.8
301,245 - GFF1649 0.59 -0.1
301,245 - GFF1649 0.59 +0.4
301,245 - GFF1649 0.59 +0.1
301,465 + GFF1649 0.71 -0.7
301,465 + GFF1649 0.71 +0.4
301,465 + GFF1649 0.71 -1.6
301,466 - GFF1649 0.71 +0.8
301,475 + GFF1649 0.72 -0.1
301,574 + GFF1649 0.77 +0.6
301,622 + GFF1649 0.79 +0.5
301,622 + GFF1649 0.79 +0.5
301,622 + GFF1649 0.79 +0.4
301,622 + GFF1649 0.79 -1.2
301,622 + GFF1649 0.79 -0.8
301,623 - GFF1649 0.79 -0.3
301,666 + GFF1649 0.82 +0.5
301,667 + GFF1649 0.82 -0.4
301,667 + GFF1649 0.82 -0.2
301,668 - GFF1649 0.82 -0.0
301,668 - GFF1649 0.82 -0.3
301,668 - GFF1649 0.82 -0.4
301,668 - GFF1649 0.82 -0.2
301,668 - GFF1649 0.82 -0.3
301,748 + GFF1649 0.86 -0.1
301,748 + GFF1649 0.86 -0.7
301,748 + GFF1649 0.86 +0.2
301,748 + GFF1649 0.86 -1.0
301,749 - GFF1649 0.86 +0.3
301,749 - GFF1649 0.86 -0.4
301,752 - GFF1649 0.86 +0.4
301,808 + GFF1649 0.89 +0.4
301,809 - GFF1649 0.89 +0.1
301,809 - GFF1649 0.89 -0.9
301,809 - GFF1649 0.89 -0.9
301,835 + +0.4
301,836 - +1.5
302,142 - +0.5
302,144 - -1.5
302,240 - GFF1650 0.12 +0.2
302,240 - GFF1650 0.12 +1.2
302,240 - GFF1650 0.12 -1.2
302,393 - GFF1650 0.20 -0.1
302,420 - GFF1650 0.21 +0.2
302,483 - GFF1650 0.25 -0.2
302,581 + GFF1650 0.30 +1.3
302,663 - GFF1650 0.34 -0.1
302,663 - GFF1650 0.34 +0.3
302,837 - GFF1650 0.43 +0.3
302,837 - GFF1650 0.43 +0.2
302,837 - GFF1650 0.43 -0.2
302,837 - GFF1650 0.43 -0.1
302,975 - GFF1650 0.50 +0.6
303,074 - GFF1650 0.56 +1.0
303,149 - GFF1650 0.59 +0.5
303,188 - GFF1650 0.61 -1.3
303,188 - GFF1650 0.61 +0.3
303,388 + GFF1650 0.72 +0.7
303,389 - GFF1650 0.72 -0.9
303,391 + GFF1650 0.72 +1.1
303,392 - GFF1650 0.72 -2.6
303,392 - GFF1650 0.72 -0.4
303,500 - GFF1650 0.78 -0.5
303,500 - GFF1650 0.78 +0.6
303,500 - GFF1650 0.78 +1.0
303,527 - GFF1650 0.79 -1.7
303,599 - GFF1650 0.83 +0.5
303,599 - GFF1650 0.83 -0.4
303,716 - GFF1650 0.89 -1.3
303,742 + +0.2
303,743 - -0.5
303,743 - +0.1
303,961 - -0.8
303,969 - +0.0
304,079 + +1.0
304,080 - +0.5
304,342 + -0.1
304,343 - -0.7
304,463 - GFF1651 0.48 +0.4
304,463 - GFF1651 0.48 -0.9
304,463 - GFF1651 0.48 +0.3
304,490 + GFF1651 0.57 -0.6
304,490 + GFF1651 0.57 -0.2
304,561 + GFF1651 0.82 -0.7
304,561 + GFF1651 0.82 +0.1
304,594 + +1.3
304,594 + -0.6
304,594 + +0.0
304,594 + -0.7
304,594 + +0.6
304,595 - +0.2
304,663 + +1.1
304,664 - +0.2

Or see this region's nucleotide sequence