Strain Fitness in Xanthobacter sp. DMC5 around GFF1640
Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Methanol and casaminos (C) |
|---|---|---|---|---|---|
| remove | |||||
| 288,920 | + | GFF1638 | 0.30 | +0.3 | |
| 288,921 | - | GFF1638 | 0.30 | -0.1 | |
| 289,038 | - | GFF1638 | 0.53 | +0.1 | |
| 289,098 | + | GFF1638 | 0.65 | -0.5 | |
| 289,098 | + | GFF1638 | 0.65 | -0.7 | |
| 289,098 | + | GFF1638 | 0.65 | -1.1 | |
| 289,099 | - | GFF1638 | 0.65 | -0.5 | |
| 289,889 | + | GFF1640 | 0.15 | +0.3 | |
| 289,889 | + | GFF1640 | 0.15 | +0.0 | |
| 289,890 | - | GFF1640 | 0.15 | -0.5 | |
| 289,890 | - | GFF1640 | 0.15 | +0.7 | |
| 290,629 | - | GFF1641 | 0.15 | +2.0 | |
| 291,088 | + | GFF1641 | 0.28 | +1.0 |
Or see this region's nucleotide sequence