Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1629 and GFF1630 are separated by 551 nucleotides GFF1630 and GFF1631 are separated by 10 nucleotides GFF1631 and GFF1632 are separated by 889 nucleotides
GFF1629 - hypothetical protein, at 276,988 to 279,570
GFF1629
GFF1630 - hypothetical protein, at 280,122 to 280,490
GFF1630
GFF1631 - hypothetical protein, at 280,501 to 280,803
GFF1631
GFF1632 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 281,693 to 282,541
GFF1632
Position (kb) 280
281 Strain fitness (log2 ratio) -1
0
1 at 279.665 kb on - strand at 279.671 kb on + strand at 279.672 kb on - strand at 279.764 kb on + strand at 279.764 kb on + strand at 279.804 kb on - strand at 279.885 kb on - strand at 280.077 kb on - strand at 280.086 kb on + strand at 280.087 kb on - strand at 280.087 kb on - strand at 280.138 kb on + strand at 280.152 kb on + strand at 280.152 kb on + strand at 280.152 kb on + strand at 280.153 kb on - strand at 280.153 kb on - strand at 280.475 kb on + strand at 280.476 kb on - strand at 280.513 kb on + strand at 280.538 kb on + strand, within GFF1631 at 280.538 kb on + strand, within GFF1631 at 280.538 kb on + strand, within GFF1631 at 280.896 kb on + strand at 280.896 kb on + strand at 280.896 kb on + strand at 280.897 kb on - strand at 280.897 kb on - strand at 280.917 kb on - strand at 280.917 kb on - strand at 281.138 kb on - strand at 281.168 kb on - strand at 281.410 kb on - strand at 281.410 kb on - strand at 281.668 kb on + strand at 281.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 279,665 - +0.3 279,671 + -0.4 279,672 - +0.1 279,764 + -0.4 279,764 + -0.1 279,804 - +0.2 279,885 - +0.1 280,077 - -0.4 280,086 + -1.7 280,087 - +0.8 280,087 - +0.8 280,138 + +0.4 280,152 + +0.2 280,152 + +0.4 280,152 + +0.3 280,153 - +0.0 280,153 - -0.5 280,475 + +0.7 280,476 - -0.3 280,513 + -0.8 280,538 + GFF1631 0.12 +0.3 280,538 + GFF1631 0.12 -0.3 280,538 + GFF1631 0.12 +0.1 280,896 + +0.8 280,896 + +0.3 280,896 + +0.4 280,897 - -0.7 280,897 - -0.6 280,917 - -1.1 280,917 - +0.7 281,138 - +0.2 281,168 - +0.9 281,410 - -0.1 281,410 - -0.1 281,668 + -0.3 281,669 - -0.3
Or see this region's nucleotide sequence