Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1613 and GFF1614 overlap by 4 nucleotides GFF1614 and GFF1615 are separated by 547 nucleotides GFF1615 and GFF1616 overlap by 4 nucleotides GFF1616 and GFF1617 are separated by 68 nucleotides GFF1617 and GFF1618 are separated by 138 nucleotides
GFF1613 - hypothetical protein, at 263,832 to 264,047
GFF1613
GFF1614 - hypothetical protein, at 264,044 to 264,283
GFF1614
GFF1615 - hypothetical protein, at 264,831 to 265,307
GFF1615
GFF1616 - hypothetical protein, at 265,304 to 265,453
GFF1616
GFF1617 - hypothetical protein, at 265,522 to 265,764
GFF1617
GFF1618 - hypothetical protein, at 265,903 to 266,676
GFF1618
Position (kb) 264
265
266 Strain fitness (log2 ratio) -1
0
1 at 263.961 kb on + strand, within GFF1613 at 264.052 kb on + strand at 264.053 kb on - strand at 264.089 kb on + strand, within GFF1614 at 264.089 kb on + strand, within GFF1614 at 264.090 kb on - strand, within GFF1614 at 264.090 kb on - strand, within GFF1614 at 264.130 kb on + strand, within GFF1614 at 264.149 kb on + strand, within GFF1614 at 264.149 kb on + strand, within GFF1614 at 264.149 kb on + strand, within GFF1614 at 264.150 kb on - strand, within GFF1614 at 264.150 kb on - strand, within GFF1614 at 264.150 kb on - strand, within GFF1614 at 264.150 kb on - strand, within GFF1614 at 264.150 kb on - strand, within GFF1614 at 264.291 kb on + strand at 264.292 kb on - strand at 264.297 kb on + strand at 264.298 kb on - strand at 264.298 kb on - strand at 264.591 kb on + strand at 264.592 kb on - strand at 264.646 kb on - strand at 264.646 kb on - strand at 264.748 kb on + strand at 264.749 kb on - strand at 264.749 kb on - strand at 264.749 kb on - strand at 264.749 kb on - strand at 264.764 kb on - strand at 264.940 kb on + strand, within GFF1615 at 265.200 kb on + strand, within GFF1615 at 265.212 kb on + strand, within GFF1615 at 265.212 kb on + strand, within GFF1615 at 265.213 kb on - strand, within GFF1615 at 265.255 kb on + strand, within GFF1615 at 265.255 kb on + strand, within GFF1615 at 265.256 kb on - strand, within GFF1615 at 265.292 kb on + strand at 265.293 kb on - strand at 265.490 kb on + strand at 265.490 kb on + strand at 265.490 kb on + strand at 265.490 kb on + strand at 265.762 kb on + strand at 265.762 kb on + strand at 265.763 kb on - strand at 265.763 kb on - strand at 265.839 kb on - strand at 266.039 kb on + strand, within GFF1618 at 266.040 kb on - strand, within GFF1618 at 266.040 kb on - strand, within GFF1618 at 266.040 kb on - strand, within GFF1618 at 266.040 kb on - strand, within GFF1618 at 266.064 kb on - strand, within GFF1618 at 266.064 kb on - strand, within GFF1618 at 266.117 kb on - strand, within GFF1618 at 266.117 kb on - strand, within GFF1618 at 266.117 kb on - strand, within GFF1618 at 266.224 kb on + strand, within GFF1618 at 266.225 kb on - strand, within GFF1618 at 266.225 kb on - strand, within GFF1618 at 266.225 kb on - strand, within GFF1618 at 266.231 kb on - strand, within GFF1618 at 266.271 kb on - strand, within GFF1618 at 266.271 kb on - strand, within GFF1618
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 263,961 + GFF1613 0.60 +0.4 264,052 + -0.5 264,053 - -0.4 264,089 + GFF1614 0.19 -0.3 264,089 + GFF1614 0.19 -0.1 264,090 - GFF1614 0.19 +0.2 264,090 - GFF1614 0.19 +0.7 264,130 + GFF1614 0.36 +0.7 264,149 + GFF1614 0.44 -0.4 264,149 + GFF1614 0.44 +0.3 264,149 + GFF1614 0.44 -0.3 264,150 - GFF1614 0.44 -0.5 264,150 - GFF1614 0.44 +0.0 264,150 - GFF1614 0.44 +0.9 264,150 - GFF1614 0.44 +0.1 264,150 - GFF1614 0.44 +0.7 264,291 + -0.6 264,292 - +0.6 264,297 + +0.5 264,298 - +0.4 264,298 - -1.1 264,591 + +0.5 264,592 - -0.5 264,646 - -0.1 264,646 - +0.7 264,748 + -0.2 264,749 - -0.0 264,749 - -0.0 264,749 - -0.6 264,749 - -0.1 264,764 - +1.0 264,940 + GFF1615 0.23 -1.2 265,200 + GFF1615 0.77 -0.4 265,212 + GFF1615 0.80 -0.7 265,212 + GFF1615 0.80 +0.6 265,213 - GFF1615 0.80 -0.4 265,255 + GFF1615 0.89 +1.0 265,255 + GFF1615 0.89 -0.4 265,256 - GFF1615 0.89 -0.5 265,292 + -0.1 265,293 - -0.7 265,490 + -0.3 265,490 + +1.3 265,490 + +0.0 265,490 + -1.3 265,762 + -0.7 265,762 + -0.2 265,763 - -0.8 265,763 - +0.3 265,839 - +1.7 266,039 + GFF1618 0.18 -0.9 266,040 - GFF1618 0.18 -0.3 266,040 - GFF1618 0.18 +0.6 266,040 - GFF1618 0.18 -0.2 266,040 - GFF1618 0.18 -0.1 266,064 - GFF1618 0.21 +0.1 266,064 - GFF1618 0.21 -1.3 266,117 - GFF1618 0.28 +0.0 266,117 - GFF1618 0.28 -0.2 266,117 - GFF1618 0.28 +0.2 266,224 + GFF1618 0.41 -0.7 266,225 - GFF1618 0.42 +0.0 266,225 - GFF1618 0.42 -1.6 266,225 - GFF1618 0.42 +0.8 266,231 - GFF1618 0.42 -0.6 266,271 - GFF1618 0.48 -0.6 266,271 - GFF1618 0.48 -0.0
Or see this region's nucleotide sequence