Strain Fitness in Xanthobacter sp. DMC5 around GFF1606

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1604 and GFF1605 are separated by 17 nucleotidesGFF1605 and GFF1606 overlap by 62 nucleotidesGFF1606 and GFF1607 are separated by 68 nucleotides GFF1604 - High-affinity branched-chain amino acid transport system permease protein LivH, at 254,663 to 255,541 GFF1604 GFF1605 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 255,559 to 256,320 GFF1605 GFF1606 - Ribose import ATP-binding protein RbsA, at 256,259 to 257,020 GFF1606 GFF1607 - hypothetical protein, at 257,089 to 258,309 GFF1607 Position (kb) 256 257 258Strain fitness (log2 ratio) -1 0 1 2at 255.264 kb on + strand, within GFF1604at 255.264 kb on + strand, within GFF1604at 255.265 kb on - strand, within GFF1604at 255.265 kb on - strand, within GFF1604at 255.345 kb on + strand, within GFF1604at 255.360 kb on + strand, within GFF1604at 255.360 kb on + strand, within GFF1604at 255.361 kb on - strand, within GFF1604at 255.361 kb on - strand, within GFF1604at 255.474 kb on + strandat 255.474 kb on + strandat 255.474 kb on + strandat 255.475 kb on - strandat 255.475 kb on - strandat 255.475 kb on - strandat 255.476 kb on + strandat 255.488 kb on + strandat 255.513 kb on + strandat 255.513 kb on + strandat 255.514 kb on - strandat 255.572 kb on + strandat 255.573 kb on - strandat 255.650 kb on + strand, within GFF1605at 255.650 kb on + strand, within GFF1605at 255.651 kb on - strand, within GFF1605at 255.927 kb on + strand, within GFF1605at 255.928 kb on - strand, within GFF1605at 255.989 kb on + strand, within GFF1605at 255.989 kb on + strand, within GFF1605at 255.990 kb on - strand, within GFF1605at 255.990 kb on - strand, within GFF1605at 256.013 kb on + strand, within GFF1605at 256.014 kb on - strand, within GFF1605at 256.092 kb on - strand, within GFF1605at 256.281 kb on + strandat 256.281 kb on + strandat 256.281 kb on + strandat 256.281 kb on + strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.321 kb on - strandat 256.582 kb on + strand, within GFF1606at 256.583 kb on - strand, within GFF1606at 256.617 kb on + strand, within GFF1606at 256.618 kb on - strand, within GFF1606at 256.618 kb on - strand, within GFF1606at 256.717 kb on - strand, within GFF1606at 256.808 kb on - strand, within GFF1606at 256.808 kb on - strand, within GFF1606at 256.859 kb on + strand, within GFF1606at 256.860 kb on - strand, within GFF1606at 256.860 kb on - strand, within GFF1606at 256.860 kb on - strand, within GFF1606at 256.860 kb on - strand, within GFF1606at 256.934 kb on - strand, within GFF1606at 256.934 kb on - strand, within GFF1606at 257.026 kb on - strandat 257.071 kb on + strandat 257.166 kb on - strandat 257.213 kb on + strand, within GFF1607at 257.213 kb on + strand, within GFF1607at 257.214 kb on - strand, within GFF1607at 257.294 kb on + strand, within GFF1607at 257.366 kb on + strand, within GFF1607at 257.366 kb on + strand, within GFF1607at 257.366 kb on + strand, within GFF1607at 257.366 kb on + strand, within GFF1607at 257.366 kb on + strand, within GFF1607at 257.522 kb on + strand, within GFF1607at 257.522 kb on + strand, within GFF1607at 257.522 kb on + strand, within GFF1607at 257.522 kb on + strand, within GFF1607at 257.522 kb on + strand, within GFF1607at 257.522 kb on + strand, within GFF1607at 257.523 kb on - strand, within GFF1607at 257.523 kb on - strand, within GFF1607at 257.523 kb on - strand, within GFF1607at 257.660 kb on + strand, within GFF1607at 257.660 kb on + strand, within GFF1607at 257.660 kb on + strand, within GFF1607at 257.661 kb on - strand, within GFF1607at 257.661 kb on - strand, within GFF1607at 257.661 kb on - strand, within GFF1607at 257.661 kb on - strand, within GFF1607at 257.661 kb on - strand, within GFF1607at 257.705 kb on - strand, within GFF1607at 257.705 kb on - strand, within GFF1607at 257.771 kb on + strand, within GFF1607at 257.772 kb on - strand, within GFF1607at 257.796 kb on + strand, within GFF1607at 257.796 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.850 kb on + strand, within GFF1607at 257.850 kb on + strand, within GFF1607at 257.850 kb on + strand, within GFF1607at 257.850 kb on + strand, within GFF1607at 257.850 kb on + strand, within GFF1607at 257.851 kb on - strand, within GFF1607at 257.851 kb on - strand, within GFF1607at 257.851 kb on - strand, within GFF1607at 257.851 kb on - strand, within GFF1607at 257.851 kb on - strand, within GFF1607at 257.851 kb on - strand, within GFF1607at 257.921 kb on + strand, within GFF1607at 257.922 kb on - strand, within GFF1607at 257.922 kb on - strand, within GFF1607at 257.922 kb on - strand, within GFF1607at 257.922 kb on - strand, within GFF1607

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
255,264 + GFF1604 0.68 +0.2
255,264 + GFF1604 0.68 +0.8
255,265 - GFF1604 0.68 +0.0
255,265 - GFF1604 0.68 -0.1
255,345 + GFF1604 0.78 +0.2
255,360 + GFF1604 0.79 -1.3
255,360 + GFF1604 0.79 +0.5
255,361 - GFF1604 0.79 +0.1
255,361 - GFF1604 0.79 -0.4
255,474 + +0.1
255,474 + -0.2
255,474 + -0.7
255,475 - -1.6
255,475 - -0.3
255,475 - +0.4
255,476 + +0.6
255,488 + +0.3
255,513 + -0.5
255,513 + -1.2
255,514 - -0.6
255,572 + +0.6
255,573 - -0.2
255,650 + GFF1605 0.12 -0.9
255,650 + GFF1605 0.12 -0.6
255,651 - GFF1605 0.12 +0.1
255,927 + GFF1605 0.48 +0.8
255,928 - GFF1605 0.48 -1.0
255,989 + GFF1605 0.56 -1.3
255,989 + GFF1605 0.56 -0.5
255,990 - GFF1605 0.57 -0.5
255,990 - GFF1605 0.57 -0.6
256,013 + GFF1605 0.60 -0.8
256,014 - GFF1605 0.60 +1.5
256,092 - GFF1605 0.70 -1.2
256,281 + +0.0
256,281 + -0.0
256,281 + -0.2
256,281 + +0.2
256,282 - +0.2
256,282 - +0.3
256,282 - -0.2
256,282 - +0.3
256,282 - +0.2
256,282 - -0.3
256,321 - -0.2
256,582 + GFF1606 0.42 +0.1
256,583 - GFF1606 0.43 +0.1
256,617 + GFF1606 0.47 +1.8
256,618 - GFF1606 0.47 -0.5
256,618 - GFF1606 0.47 -1.3
256,717 - GFF1606 0.60 +0.0
256,808 - GFF1606 0.72 -0.2
256,808 - GFF1606 0.72 +1.0
256,859 + GFF1606 0.79 -0.3
256,860 - GFF1606 0.79 +0.1
256,860 - GFF1606 0.79 -0.1
256,860 - GFF1606 0.79 -0.5
256,860 - GFF1606 0.79 -0.0
256,934 - GFF1606 0.89 -0.1
256,934 - GFF1606 0.89 +0.1
257,026 - -0.3
257,071 + +0.2
257,166 - +0.2
257,213 + GFF1607 0.10 +0.8
257,213 + GFF1607 0.10 -0.5
257,214 - GFF1607 0.10 -0.1
257,294 + GFF1607 0.17 +0.3
257,366 + GFF1607 0.23 +0.4
257,366 + GFF1607 0.23 -1.3
257,366 + GFF1607 0.23 -0.1
257,366 + GFF1607 0.23 -0.6
257,366 + GFF1607 0.23 +0.0
257,522 + GFF1607 0.35 -0.3
257,522 + GFF1607 0.35 -1.2
257,522 + GFF1607 0.35 -0.9
257,522 + GFF1607 0.35 +0.5
257,522 + GFF1607 0.35 -0.4
257,522 + GFF1607 0.35 +0.1
257,523 - GFF1607 0.36 +0.2
257,523 - GFF1607 0.36 -0.4
257,523 - GFF1607 0.36 +0.2
257,660 + GFF1607 0.47 +0.2
257,660 + GFF1607 0.47 -0.6
257,660 + GFF1607 0.47 -0.7
257,661 - GFF1607 0.47 +0.2
257,661 - GFF1607 0.47 +0.5
257,661 - GFF1607 0.47 +0.3
257,661 - GFF1607 0.47 +0.6
257,661 - GFF1607 0.47 +0.3
257,705 - GFF1607 0.50 +0.3
257,705 - GFF1607 0.50 +0.5
257,771 + GFF1607 0.56 -0.3
257,772 - GFF1607 0.56 +0.3
257,796 + GFF1607 0.58 -0.4
257,796 + GFF1607 0.58 +0.5
257,846 + GFF1607 0.62 +0.4
257,846 + GFF1607 0.62 -0.5
257,846 + GFF1607 0.62 -0.3
257,846 + GFF1607 0.62 -1.1
257,846 + GFF1607 0.62 -0.1
257,846 + GFF1607 0.62 -0.3
257,846 + GFF1607 0.62 +0.4
257,847 - GFF1607 0.62 +0.3
257,847 - GFF1607 0.62 +0.7
257,847 - GFF1607 0.62 -0.3
257,847 - GFF1607 0.62 +1.0
257,847 - GFF1607 0.62 +0.1
257,847 - GFF1607 0.62 +0.3
257,847 - GFF1607 0.62 +0.7
257,847 - GFF1607 0.62 +0.6
257,847 - GFF1607 0.62 +1.0
257,850 + GFF1607 0.62 +0.1
257,850 + GFF1607 0.62 -1.7
257,850 + GFF1607 0.62 -0.6
257,850 + GFF1607 0.62 +0.4
257,850 + GFF1607 0.62 -0.4
257,851 - GFF1607 0.62 -1.5
257,851 - GFF1607 0.62 +0.9
257,851 - GFF1607 0.62 -0.5
257,851 - GFF1607 0.62 +1.1
257,851 - GFF1607 0.62 +0.5
257,851 - GFF1607 0.62 +0.5
257,921 + GFF1607 0.68 +0.1
257,922 - GFF1607 0.68 +1.5
257,922 - GFF1607 0.68 -0.6
257,922 - GFF1607 0.68 -0.6
257,922 - GFF1607 0.68 +0.3

Or see this region's nucleotide sequence