Strain Fitness in Xanthobacter sp. DMC5 around GFF1602

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1601 and GFF1602 are separated by 42 nucleotidesGFF1602 and GFF1603 are separated by 25 nucleotidesGFF1603 and GFF1604 overlap by 1 nucleotides GFF1601 - hypothetical protein, at 250,835 to 252,187 GFF1601 GFF1602 - Alpha-ketoglutaric semialdehyde dehydrogenase 1, at 252,230 to 253,669 GFF1602 GFF1603 - hypothetical protein, at 253,695 to 254,663 GFF1603 GFF1604 - High-affinity branched-chain amino acid transport system permease protein LivH, at 254,663 to 255,541 GFF1604 Position (kb) 252 253 254Strain fitness (log2 ratio) -2 -1 0 1 2at 251.385 kb on + strand, within GFF1601at 251.385 kb on + strand, within GFF1601at 251.385 kb on + strand, within GFF1601at 251.386 kb on - strand, within GFF1601at 251.386 kb on - strand, within GFF1601at 251.386 kb on - strand, within GFF1601at 251.386 kb on - strand, within GFF1601at 251.386 kb on - strand, within GFF1601at 251.386 kb on - strand, within GFF1601at 251.487 kb on - strand, within GFF1601at 251.487 kb on - strand, within GFF1601at 251.487 kb on - strand, within GFF1601at 251.534 kb on + strand, within GFF1601at 251.534 kb on + strand, within GFF1601at 251.534 kb on + strand, within GFF1601at 251.601 kb on - strand, within GFF1601at 251.734 kb on - strand, within GFF1601at 251.734 kb on - strand, within GFF1601at 251.801 kb on + strand, within GFF1601at 251.915 kb on + strand, within GFF1601at 251.915 kb on + strand, within GFF1601at 252.004 kb on + strand, within GFF1601at 252.005 kb on - strand, within GFF1601at 252.005 kb on - strand, within GFF1601at 252.005 kb on - strand, within GFF1601at 252.005 kb on - strand, within GFF1601at 252.101 kb on + strandat 252.300 kb on + strandat 252.301 kb on - strandat 252.301 kb on - strandat 252.429 kb on + strand, within GFF1602at 252.429 kb on + strand, within GFF1602at 252.429 kb on + strand, within GFF1602at 252.429 kb on + strand, within GFF1602at 252.429 kb on + strand, within GFF1602at 252.429 kb on + strand, within GFF1602at 252.429 kb on + strand, within GFF1602at 252.576 kb on + strand, within GFF1602at 252.577 kb on - strand, within GFF1602at 252.729 kb on + strand, within GFF1602at 252.830 kb on - strand, within GFF1602at 252.870 kb on - strand, within GFF1602at 252.932 kb on + strand, within GFF1602at 252.933 kb on - strand, within GFF1602at 252.933 kb on - strand, within GFF1602at 252.937 kb on + strand, within GFF1602at 252.937 kb on + strand, within GFF1602at 252.937 kb on + strand, within GFF1602at 252.937 kb on + strand, within GFF1602at 252.938 kb on - strand, within GFF1602at 253.016 kb on + strand, within GFF1602at 253.017 kb on - strand, within GFF1602at 253.017 kb on - strand, within GFF1602at 253.017 kb on - strand, within GFF1602at 253.017 kb on - strand, within GFF1602at 253.017 kb on - strand, within GFF1602at 253.060 kb on + strand, within GFF1602at 253.061 kb on - strand, within GFF1602at 253.061 kb on - strand, within GFF1602at 253.249 kb on + strand, within GFF1602at 253.249 kb on + strand, within GFF1602at 253.250 kb on - strand, within GFF1602at 253.250 kb on - strand, within GFF1602at 253.299 kb on + strand, within GFF1602at 253.300 kb on - strand, within GFF1602at 253.324 kb on - strand, within GFF1602at 253.324 kb on - strand, within GFF1602at 253.494 kb on + strand, within GFF1602at 253.650 kb on + strandat 253.651 kb on - strandat 253.657 kb on - strandat 253.657 kb on - strandat 253.676 kb on + strandat 253.676 kb on + strandat 253.676 kb on + strandat 253.676 kb on + strandat 253.677 kb on - strandat 253.677 kb on - strandat 253.677 kb on - strandat 253.677 kb on - strandat 253.677 kb on - strandat 253.677 kb on - strandat 253.697 kb on - strandat 253.719 kb on + strandat 253.720 kb on - strandat 253.961 kb on + strand, within GFF1603at 253.961 kb on + strand, within GFF1603at 254.017 kb on + strand, within GFF1603at 254.017 kb on + strand, within GFF1603at 254.017 kb on + strand, within GFF1603at 254.017 kb on + strand, within GFF1603at 254.017 kb on + strand, within GFF1603at 254.017 kb on + strand, within GFF1603at 254.018 kb on - strand, within GFF1603at 254.018 kb on - strand, within GFF1603at 254.018 kb on - strand, within GFF1603at 254.018 kb on - strand, within GFF1603at 254.018 kb on - strand, within GFF1603at 254.032 kb on + strand, within GFF1603at 254.032 kb on + strand, within GFF1603at 254.260 kb on + strand, within GFF1603at 254.261 kb on - strand, within GFF1603at 254.405 kb on + strand, within GFF1603at 254.406 kb on - strand, within GFF1603at 254.406 kb on - strand, within GFF1603at 254.413 kb on + strand, within GFF1603at 254.423 kb on + strand, within GFF1603at 254.423 kb on + strand, within GFF1603at 254.423 kb on + strand, within GFF1603at 254.424 kb on - strand, within GFF1603at 254.424 kb on - strand, within GFF1603at 254.424 kb on - strand, within GFF1603at 254.425 kb on + strand, within GFF1603at 254.425 kb on + strand, within GFF1603at 254.425 kb on + strand, within GFF1603at 254.426 kb on - strand, within GFF1603at 254.477 kb on - strand, within GFF1603at 254.477 kb on - strand, within GFF1603at 254.515 kb on + strand, within GFF1603at 254.515 kb on + strand, within GFF1603at 254.515 kb on + strand, within GFF1603at 254.515 kb on + strand, within GFF1603at 254.546 kb on - strand, within GFF1603

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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251,385 + GFF1601 0.41 -0.3
251,385 + GFF1601 0.41 -0.3
251,385 + GFF1601 0.41 -0.6
251,386 - GFF1601 0.41 -1.0
251,386 - GFF1601 0.41 -0.4
251,386 - GFF1601 0.41 -0.1
251,386 - GFF1601 0.41 +0.0
251,386 - GFF1601 0.41 -0.2
251,386 - GFF1601 0.41 +0.2
251,487 - GFF1601 0.48 -0.7
251,487 - GFF1601 0.48 +1.2
251,487 - GFF1601 0.48 -1.1
251,534 + GFF1601 0.52 -0.3
251,534 + GFF1601 0.52 -0.7
251,534 + GFF1601 0.52 +0.2
251,601 - GFF1601 0.57 -0.4
251,734 - GFF1601 0.66 -0.7
251,734 - GFF1601 0.66 -0.1
251,801 + GFF1601 0.71 +0.2
251,915 + GFF1601 0.80 -0.0
251,915 + GFF1601 0.80 +0.2
252,004 + GFF1601 0.86 -0.1
252,005 - GFF1601 0.86 -0.2
252,005 - GFF1601 0.86 -0.4
252,005 - GFF1601 0.86 -0.9
252,005 - GFF1601 0.86 +0.2
252,101 + -0.1
252,300 + +0.3
252,301 - +0.6
252,301 - +0.1
252,429 + GFF1602 0.14 +0.4
252,429 + GFF1602 0.14 -0.2
252,429 + GFF1602 0.14 +0.2
252,429 + GFF1602 0.14 -0.1
252,429 + GFF1602 0.14 +0.2
252,429 + GFF1602 0.14 +1.2
252,429 + GFF1602 0.14 -0.8
252,576 + GFF1602 0.24 -1.1
252,577 - GFF1602 0.24 +0.3
252,729 + GFF1602 0.35 +1.1
252,830 - GFF1602 0.42 -0.2
252,870 - GFF1602 0.44 -0.4
252,932 + GFF1602 0.49 -1.0
252,933 - GFF1602 0.49 +1.3
252,933 - GFF1602 0.49 -0.5
252,937 + GFF1602 0.49 -0.2
252,937 + GFF1602 0.49 -0.6
252,937 + GFF1602 0.49 -0.1
252,937 + GFF1602 0.49 -0.8
252,938 - GFF1602 0.49 -0.1
253,016 + GFF1602 0.55 -2.0
253,017 - GFF1602 0.55 +1.3
253,017 - GFF1602 0.55 +0.3
253,017 - GFF1602 0.55 -0.0
253,017 - GFF1602 0.55 +0.0
253,017 - GFF1602 0.55 +0.7
253,060 + GFF1602 0.58 +0.6
253,061 - GFF1602 0.58 +0.5
253,061 - GFF1602 0.58 -0.4
253,249 + GFF1602 0.71 -0.3
253,249 + GFF1602 0.71 +0.3
253,250 - GFF1602 0.71 +0.2
253,250 - GFF1602 0.71 +0.1
253,299 + GFF1602 0.74 +0.5
253,300 - GFF1602 0.74 +0.0
253,324 - GFF1602 0.76 +0.3
253,324 - GFF1602 0.76 -1.4
253,494 + GFF1602 0.88 +0.3
253,650 + +0.0
253,651 - +0.2
253,657 - +0.7
253,657 - +0.2
253,676 + -0.4
253,676 + +0.4
253,676 + +0.9
253,676 + -0.4
253,677 - -0.1
253,677 - -0.9
253,677 - -0.3
253,677 - -0.5
253,677 - -0.4
253,677 - +0.2
253,697 - +0.3
253,719 + -0.1
253,720 - -0.6
253,961 + GFF1603 0.27 -0.2
253,961 + GFF1603 0.27 -2.4
254,017 + GFF1603 0.33 -0.2
254,017 + GFF1603 0.33 -0.3
254,017 + GFF1603 0.33 -1.1
254,017 + GFF1603 0.33 -0.0
254,017 + GFF1603 0.33 +0.4
254,017 + GFF1603 0.33 -0.4
254,018 - GFF1603 0.33 +0.3
254,018 - GFF1603 0.33 -1.3
254,018 - GFF1603 0.33 +1.0
254,018 - GFF1603 0.33 +1.1
254,018 - GFF1603 0.33 +0.8
254,032 + GFF1603 0.35 -0.5
254,032 + GFF1603 0.35 -0.5
254,260 + GFF1603 0.58 +0.1
254,261 - GFF1603 0.58 -0.4
254,405 + GFF1603 0.73 -0.1
254,406 - GFF1603 0.73 -0.1
254,406 - GFF1603 0.73 -1.2
254,413 + GFF1603 0.74 -0.8
254,423 + GFF1603 0.75 -0.2
254,423 + GFF1603 0.75 -0.1
254,423 + GFF1603 0.75 -0.3
254,424 - GFF1603 0.75 +1.8
254,424 - GFF1603 0.75 +1.1
254,424 - GFF1603 0.75 +0.8
254,425 + GFF1603 0.75 -0.4
254,425 + GFF1603 0.75 -0.0
254,425 + GFF1603 0.75 -0.4
254,426 - GFF1603 0.75 +0.8
254,477 - GFF1603 0.81 -0.2
254,477 - GFF1603 0.81 +0.2
254,515 + GFF1603 0.85 -0.1
254,515 + GFF1603 0.85 +0.5
254,515 + GFF1603 0.85 +1.2
254,515 + GFF1603 0.85 +0.2
254,546 - GFF1603 0.88 +0.2

Or see this region's nucleotide sequence