Strain Fitness in Xanthobacter sp. DMC5 around GFF1597

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1596 and GFF1597 are separated by 776 nucleotidesGFF1597 and GFF1598 are separated by 17 nucleotides GFF1596 - hypothetical protein, at 245,356 to 246,486 GFF1596 GFF1597 - Muconate cycloisomerase 1, at 247,263 to 248,414 GFF1597 GFF1598 - 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, at 248,432 to 249,307 GFF1598 Position (kb) 247 248 249Strain fitness (log2 ratio) -2 -1 0 1at 246.298 kb on + strand, within GFF1596at 246.298 kb on + strand, within GFF1596at 246.298 kb on + strand, within GFF1596at 246.298 kb on + strand, within GFF1596at 246.298 kb on + strand, within GFF1596at 246.298 kb on + strand, within GFF1596at 246.298 kb on + strand, within GFF1596at 246.299 kb on - strand, within GFF1596at 246.299 kb on - strand, within GFF1596at 246.436 kb on + strandat 246.436 kb on + strandat 246.436 kb on + strandat 246.477 kb on + strandat 246.523 kb on + strandat 246.523 kb on + strandat 246.524 kb on - strandat 246.706 kb on + strandat 246.706 kb on + strandat 246.707 kb on - strandat 246.707 kb on - strandat 246.707 kb on - strandat 246.764 kb on + strandat 246.764 kb on + strandat 246.765 kb on - strandat 246.776 kb on - strandat 246.809 kb on + strandat 246.876 kb on + strandat 246.885 kb on - strandat 246.885 kb on - strandat 246.887 kb on - strandat 246.887 kb on - strandat 246.887 kb on - strandat 246.887 kb on - strandat 246.902 kb on + strandat 246.902 kb on + strandat 246.902 kb on + strandat 246.903 kb on - strandat 246.912 kb on + strandat 246.912 kb on + strandat 246.913 kb on - strandat 246.913 kb on - strandat 246.913 kb on - strandat 246.939 kb on + strandat 246.939 kb on + strandat 246.939 kb on + strandat 246.940 kb on - strandat 246.980 kb on - strandat 247.054 kb on + strandat 247.061 kb on - strandat 247.264 kb on + strandat 247.323 kb on + strandat 247.324 kb on - strandat 247.324 kb on - strandat 247.394 kb on + strand, within GFF1597at 247.529 kb on + strand, within GFF1597at 247.529 kb on + strand, within GFF1597at 247.530 kb on - strand, within GFF1597at 247.776 kb on + strand, within GFF1597at 247.776 kb on + strand, within GFF1597at 247.776 kb on + strand, within GFF1597at 247.776 kb on + strand, within GFF1597at 247.776 kb on + strand, within GFF1597at 247.777 kb on - strand, within GFF1597at 247.777 kb on - strand, within GFF1597at 247.777 kb on - strand, within GFF1597at 247.777 kb on - strand, within GFF1597at 247.777 kb on - strand, within GFF1597at 247.850 kb on + strand, within GFF1597at 247.887 kb on - strand, within GFF1597at 247.892 kb on + strand, within GFF1597at 247.965 kb on + strand, within GFF1597at 247.965 kb on + strand, within GFF1597at 247.965 kb on + strand, within GFF1597at 247.966 kb on - strand, within GFF1597at 247.966 kb on - strand, within GFF1597at 248.166 kb on + strand, within GFF1597at 248.167 kb on - strand, within GFF1597at 248.167 kb on - strand, within GFF1597at 248.214 kb on - strand, within GFF1597at 248.278 kb on + strand, within GFF1597at 248.278 kb on + strand, within GFF1597at 248.278 kb on + strand, within GFF1597at 248.279 kb on - strand, within GFF1597at 248.279 kb on - strand, within GFF1597at 248.279 kb on - strand, within GFF1597at 248.279 kb on - strand, within GFF1597at 248.529 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.638 kb on - strand, within GFF1598at 248.638 kb on - strand, within GFF1598at 248.638 kb on - strand, within GFF1598at 248.703 kb on + strand, within GFF1598at 248.704 kb on - strand, within GFF1598at 248.704 kb on - strand, within GFF1598at 248.753 kb on + strand, within GFF1598at 248.754 kb on - strand, within GFF1598at 248.754 kb on - strand, within GFF1598at 248.809 kb on + strand, within GFF1598at 248.810 kb on - strand, within GFF1598at 248.844 kb on + strand, within GFF1598at 248.845 kb on - strand, within GFF1598at 248.963 kb on + strand, within GFF1598at 248.963 kb on + strand, within GFF1598at 248.964 kb on - strand, within GFF1598at 249.037 kb on + strand, within GFF1598at 249.037 kb on + strand, within GFF1598at 249.038 kb on - strand, within GFF1598at 249.105 kb on + strand, within GFF1598at 249.270 kb on + strandat 249.270 kb on + strandat 249.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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246,298 + GFF1596 0.83 -0.3
246,298 + GFF1596 0.83 -0.7
246,298 + GFF1596 0.83 +1.1
246,298 + GFF1596 0.83 +1.4
246,298 + GFF1596 0.83 +1.3
246,298 + GFF1596 0.83 -0.9
246,298 + GFF1596 0.83 +0.8
246,299 - GFF1596 0.83 +0.1
246,299 - GFF1596 0.83 -0.7
246,436 + -0.4
246,436 + -0.6
246,436 + -0.9
246,477 + -0.3
246,523 + +0.4
246,523 + +0.1
246,524 - -0.8
246,706 + -0.8
246,706 + -0.3
246,707 - -0.5
246,707 - -1.9
246,707 - -0.2
246,764 + -0.3
246,764 + -0.5
246,765 - -1.0
246,776 - +0.2
246,809 + +0.2
246,876 + +0.2
246,885 - +0.2
246,885 - +0.2
246,887 - +0.2
246,887 - -0.7
246,887 - -1.4
246,887 - +0.2
246,902 + +0.0
246,902 + +0.8
246,902 + +0.7
246,903 - -0.1
246,912 + +0.6
246,912 + -0.9
246,913 - +0.3
246,913 - +0.2
246,913 - +0.8
246,939 + -0.2
246,939 + -1.2
246,939 + -0.5
246,940 - +0.3
246,980 - -0.4
247,054 + -0.5
247,061 - +0.5
247,264 + +0.5
247,323 + -0.5
247,324 - +0.0
247,324 - -1.5
247,394 + GFF1597 0.11 +0.4
247,529 + GFF1597 0.23 -0.3
247,529 + GFF1597 0.23 -0.5
247,530 - GFF1597 0.23 -0.1
247,776 + GFF1597 0.45 -0.4
247,776 + GFF1597 0.45 -0.6
247,776 + GFF1597 0.45 +0.4
247,776 + GFF1597 0.45 -0.2
247,776 + GFF1597 0.45 -1.1
247,777 - GFF1597 0.45 -0.0
247,777 - GFF1597 0.45 -0.7
247,777 - GFF1597 0.45 -0.3
247,777 - GFF1597 0.45 -0.2
247,777 - GFF1597 0.45 -1.8
247,850 + GFF1597 0.51 -0.2
247,887 - GFF1597 0.54 -0.3
247,892 + GFF1597 0.55 -0.5
247,965 + GFF1597 0.61 +0.6
247,965 + GFF1597 0.61 +0.7
247,965 + GFF1597 0.61 +0.4
247,966 - GFF1597 0.61 -0.3
247,966 - GFF1597 0.61 +0.5
248,166 + GFF1597 0.78 -0.2
248,167 - GFF1597 0.78 -0.5
248,167 - GFF1597 0.78 +0.4
248,214 - GFF1597 0.83 -0.9
248,278 + GFF1597 0.88 +0.3
248,278 + GFF1597 0.88 +0.0
248,278 + GFF1597 0.88 -0.5
248,279 - GFF1597 0.88 -0.5
248,279 - GFF1597 0.88 +0.0
248,279 - GFF1597 0.88 +0.9
248,279 - GFF1597 0.88 -0.3
248,529 + GFF1598 0.11 -1.3
248,637 + GFF1598 0.23 -0.7
248,637 + GFF1598 0.23 -0.8
248,637 + GFF1598 0.23 -0.4
248,637 + GFF1598 0.23 -0.1
248,637 + GFF1598 0.23 +0.3
248,637 + GFF1598 0.23 +0.1
248,638 - GFF1598 0.24 -0.0
248,638 - GFF1598 0.24 -0.1
248,638 - GFF1598 0.24 -1.3
248,703 + GFF1598 0.31 +0.1
248,704 - GFF1598 0.31 +0.1
248,704 - GFF1598 0.31 -0.8
248,753 + GFF1598 0.37 +0.2
248,754 - GFF1598 0.37 +0.0
248,754 - GFF1598 0.37 -1.7
248,809 + GFF1598 0.43 +1.2
248,810 - GFF1598 0.43 +0.7
248,844 + GFF1598 0.47 -0.3
248,845 - GFF1598 0.47 -0.2
248,963 + GFF1598 0.61 +0.2
248,963 + GFF1598 0.61 -0.3
248,964 - GFF1598 0.61 +0.5
249,037 + GFF1598 0.69 -1.0
249,037 + GFF1598 0.69 +0.1
249,038 - GFF1598 0.69 +1.1
249,105 + GFF1598 0.77 +1.1
249,270 + -0.4
249,270 + +1.0
249,409 - +0.1

Or see this region's nucleotide sequence