Strain Fitness in Xanthobacter sp. DMC5 around GFF1587

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1585 and GFF1586 are separated by 4 nucleotidesGFF1586 and GFF1587 are separated by 36 nucleotidesGFF1587 and GFF1588 are separated by 213 nucleotides GFF1585 - 2-hydroxymuconate tautomerase, at 231,889 to 232,101 GFF1585 GFF1586 - Soluble epoxide hydrolase, at 232,106 to 233,011 GFF1586 GFF1587 - Long-chain-fatty-acid--CoA ligase, at 233,048 to 234,646 GFF1587 GFF1588 - 2-haloacrylate reductase, at 234,860 to 235,846 GFF1588 Position (kb) 233 234 235Strain fitness (log2 ratio) -2 -1 0 1at 232.115 kb on + strandat 232.116 kb on - strandat 232.128 kb on + strandat 232.181 kb on + strandat 232.182 kb on - strandat 232.182 kb on - strandat 232.284 kb on - strand, within GFF1586at 232.319 kb on - strand, within GFF1586at 232.641 kb on - strand, within GFF1586at 232.714 kb on + strand, within GFF1586at 232.757 kb on + strand, within GFF1586at 232.757 kb on + strand, within GFF1586at 232.757 kb on + strand, within GFF1586at 232.757 kb on + strand, within GFF1586at 232.898 kb on + strand, within GFF1586at 232.898 kb on + strand, within GFF1586at 232.899 kb on - strand, within GFF1586at 232.952 kb on + strandat 232.952 kb on + strandat 232.952 kb on + strandat 232.952 kb on + strandat 232.952 kb on + strandat 233.154 kb on + strandat 233.154 kb on + strandat 233.154 kb on + strandat 233.154 kb on + strandat 233.155 kb on - strandat 233.155 kb on - strandat 233.155 kb on - strandat 233.155 kb on - strandat 233.155 kb on - strandat 233.155 kb on - strandat 233.228 kb on - strand, within GFF1587at 233.305 kb on - strand, within GFF1587at 233.305 kb on - strand, within GFF1587at 233.305 kb on - strand, within GFF1587at 233.383 kb on - strand, within GFF1587at 233.388 kb on + strand, within GFF1587at 233.388 kb on + strand, within GFF1587at 233.388 kb on + strand, within GFF1587at 233.388 kb on + strand, within GFF1587at 233.389 kb on - strand, within GFF1587at 233.389 kb on - strand, within GFF1587at 233.475 kb on + strand, within GFF1587at 233.476 kb on - strand, within GFF1587at 233.476 kb on - strand, within GFF1587at 233.661 kb on + strand, within GFF1587at 233.661 kb on + strand, within GFF1587at 233.662 kb on - strand, within GFF1587at 233.662 kb on - strand, within GFF1587at 233.739 kb on + strand, within GFF1587at 233.784 kb on + strand, within GFF1587at 233.785 kb on - strand, within GFF1587at 233.785 kb on - strand, within GFF1587at 233.836 kb on + strand, within GFF1587at 233.973 kb on + strand, within GFF1587at 234.316 kb on - strand, within GFF1587at 234.397 kb on + strand, within GFF1587at 234.489 kb on + strandat 234.489 kb on + strandat 234.490 kb on - strandat 234.694 kb on + strandat 234.865 kb on + strandat 234.866 kb on - strandat 234.866 kb on - strandat 234.866 kb on - strandat 234.866 kb on - strandat 235.004 kb on + strand, within GFF1588at 235.004 kb on + strand, within GFF1588at 235.004 kb on + strand, within GFF1588at 235.004 kb on + strand, within GFF1588at 235.004 kb on + strand, within GFF1588at 235.005 kb on - strand, within GFF1588at 235.005 kb on - strand, within GFF1588at 235.127 kb on + strand, within GFF1588at 235.128 kb on - strand, within GFF1588at 235.128 kb on - strand, within GFF1588at 235.128 kb on - strand, within GFF1588at 235.151 kb on + strand, within GFF1588at 235.151 kb on + strand, within GFF1588at 235.152 kb on - strand, within GFF1588at 235.442 kb on + strand, within GFF1588at 235.442 kb on + strand, within GFF1588at 235.508 kb on + strand, within GFF1588at 235.508 kb on + strand, within GFF1588at 235.508 kb on + strand, within GFF1588at 235.508 kb on + strand, within GFF1588at 235.508 kb on + strand, within GFF1588at 235.508 kb on + strand, within GFF1588at 235.509 kb on - strand, within GFF1588at 235.509 kb on - strand, within GFF1588

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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232,115 + +0.6
232,116 - +0.5
232,128 + -0.1
232,181 + +0.9
232,182 - +0.4
232,182 - -0.8
232,284 - GFF1586 0.20 -0.9
232,319 - GFF1586 0.24 +0.1
232,641 - GFF1586 0.59 -0.1
232,714 + GFF1586 0.67 -0.8
232,757 + GFF1586 0.72 +0.0
232,757 + GFF1586 0.72 +0.2
232,757 + GFF1586 0.72 +0.4
232,757 + GFF1586 0.72 -0.8
232,898 + GFF1586 0.87 -0.7
232,898 + GFF1586 0.87 -0.5
232,899 - GFF1586 0.88 -0.7
232,952 + -0.6
232,952 + -0.1
232,952 + +1.1
232,952 + -0.3
232,952 + +0.5
233,154 + +0.6
233,154 + -0.5
233,154 + -0.1
233,154 + -1.2
233,155 - +0.1
233,155 - +0.4
233,155 - +0.3
233,155 - -0.2
233,155 - -0.3
233,155 - -0.2
233,228 - GFF1587 0.11 -1.5
233,305 - GFF1587 0.16 +0.1
233,305 - GFF1587 0.16 +0.1
233,305 - GFF1587 0.16 -1.3
233,383 - GFF1587 0.21 -0.2
233,388 + GFF1587 0.21 +0.1
233,388 + GFF1587 0.21 +0.4
233,388 + GFF1587 0.21 -1.0
233,388 + GFF1587 0.21 +0.7
233,389 - GFF1587 0.21 +0.2
233,389 - GFF1587 0.21 +0.1
233,475 + GFF1587 0.27 +0.1
233,476 - GFF1587 0.27 -0.9
233,476 - GFF1587 0.27 -1.7
233,661 + GFF1587 0.38 +0.0
233,661 + GFF1587 0.38 +0.2
233,662 - GFF1587 0.38 -0.6
233,662 - GFF1587 0.38 -0.1
233,739 + GFF1587 0.43 -1.1
233,784 + GFF1587 0.46 -0.4
233,785 - GFF1587 0.46 -2.5
233,785 - GFF1587 0.46 -0.0
233,836 + GFF1587 0.49 -0.7
233,973 + GFF1587 0.58 -0.4
234,316 - GFF1587 0.79 -1.7
234,397 + GFF1587 0.84 +0.3
234,489 + -0.8
234,489 + -0.4
234,490 - +0.9
234,694 + -0.3
234,865 + -1.0
234,866 - +0.1
234,866 - -0.5
234,866 - -0.1
234,866 - -0.6
235,004 + GFF1588 0.15 -0.1
235,004 + GFF1588 0.15 -0.4
235,004 + GFF1588 0.15 -0.1
235,004 + GFF1588 0.15 -1.8
235,004 + GFF1588 0.15 -0.4
235,005 - GFF1588 0.15 -0.1
235,005 - GFF1588 0.15 -0.5
235,127 + GFF1588 0.27 -0.1
235,128 - GFF1588 0.27 +1.3
235,128 - GFF1588 0.27 +1.0
235,128 - GFF1588 0.27 -0.3
235,151 + GFF1588 0.29 +0.0
235,151 + GFF1588 0.29 +0.6
235,152 - GFF1588 0.30 +0.8
235,442 + GFF1588 0.59 -0.1
235,442 + GFF1588 0.59 +0.4
235,508 + GFF1588 0.66 -0.4
235,508 + GFF1588 0.66 -0.1
235,508 + GFF1588 0.66 +0.4
235,508 + GFF1588 0.66 -0.2
235,508 + GFF1588 0.66 +0.8
235,508 + GFF1588 0.66 +0.5
235,509 - GFF1588 0.66 -0.3
235,509 - GFF1588 0.66 +0.2

Or see this region's nucleotide sequence