Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1582 and GFF1583 overlap by 4 nucleotides GFF1583 and GFF1584 are separated by 85 nucleotides GFF1584 and GFF1585 are separated by 291 nucleotides GFF1585 and GFF1586 are separated by 4 nucleotides
GFF1582 - hypothetical protein, at 228,286 to 229,332
GFF1582
GFF1583 - High-affinity branched-chain amino acid transport system permease protein LivH, at 229,329 to 230,213
GFF1583
GFF1584 - hypothetical protein, at 230,299 to 231,597
GFF1584
GFF1585 - 2-hydroxymuconate tautomerase, at 231,889 to 232,101
GFF1585
GFF1586 - Soluble epoxide hydrolase, at 232,106 to 233,011
GFF1586
Position (kb) 230
231
232 Strain fitness (log2 ratio) -2
-1
0
1
2 at 229.625 kb on - strand, within GFF1583 at 229.625 kb on - strand, within GFF1583 at 229.625 kb on - strand, within GFF1583 at 229.813 kb on + strand, within GFF1583 at 229.813 kb on + strand, within GFF1583 at 229.813 kb on + strand, within GFF1583 at 229.813 kb on + strand, within GFF1583 at 229.816 kb on + strand, within GFF1583 at 229.978 kb on + strand, within GFF1583 at 230.065 kb on + strand, within GFF1583 at 230.065 kb on + strand, within GFF1583 at 230.066 kb on - strand, within GFF1583 at 230.066 kb on - strand, within GFF1583 at 230.156 kb on - strand at 230.156 kb on - strand at 230.156 kb on - strand at 230.156 kb on - strand at 230.156 kb on - strand at 230.156 kb on - strand at 230.156 kb on - strand at 230.239 kb on + strand at 230.339 kb on - strand at 230.449 kb on + strand, within GFF1584 at 230.465 kb on + strand, within GFF1584 at 230.466 kb on - strand, within GFF1584 at 230.466 kb on - strand, within GFF1584 at 230.573 kb on + strand, within GFF1584 at 230.573 kb on + strand, within GFF1584 at 230.574 kb on - strand, within GFF1584 at 230.574 kb on - strand, within GFF1584 at 230.574 kb on - strand, within GFF1584 at 230.574 kb on - strand, within GFF1584 at 230.574 kb on - strand, within GFF1584 at 230.574 kb on - strand, within GFF1584 at 230.574 kb on - strand, within GFF1584 at 230.574 kb on - strand, within GFF1584 at 230.574 kb on - strand, within GFF1584 at 230.574 kb on - strand, within GFF1584 at 230.601 kb on - strand, within GFF1584 at 230.601 kb on - strand, within GFF1584 at 230.711 kb on + strand, within GFF1584 at 230.711 kb on + strand, within GFF1584 at 230.712 kb on - strand, within GFF1584 at 230.712 kb on - strand, within GFF1584 at 230.714 kb on + strand, within GFF1584 at 230.744 kb on + strand, within GFF1584 at 230.744 kb on + strand, within GFF1584 at 230.745 kb on - strand, within GFF1584 at 230.745 kb on - strand, within GFF1584 at 230.849 kb on + strand, within GFF1584 at 230.849 kb on + strand, within GFF1584 at 230.850 kb on - strand, within GFF1584 at 230.850 kb on - strand, within GFF1584 at 230.954 kb on + strand, within GFF1584 at 231.020 kb on + strand, within GFF1584 at 231.020 kb on + strand, within GFF1584 at 231.020 kb on + strand, within GFF1584 at 231.020 kb on + strand, within GFF1584 at 231.021 kb on - strand, within GFF1584 at 231.021 kb on - strand, within GFF1584 at 231.021 kb on - strand, within GFF1584 at 231.021 kb on - strand, within GFF1584 at 231.131 kb on + strand, within GFF1584 at 231.132 kb on - strand, within GFF1584 at 231.150 kb on - strand, within GFF1584 at 231.194 kb on + strand, within GFF1584 at 231.194 kb on + strand, within GFF1584 at 231.194 kb on + strand, within GFF1584 at 231.195 kb on - strand, within GFF1584 at 231.472 kb on + strand at 231.472 kb on + strand at 231.473 kb on - strand at 231.473 kb on - strand at 231.591 kb on + strand at 231.591 kb on + strand at 231.592 kb on - strand at 231.676 kb on + strand at 231.677 kb on - strand at 231.924 kb on + strand, within GFF1585 at 231.925 kb on - strand, within GFF1585 at 231.949 kb on + strand, within GFF1585 at 231.949 kb on + strand, within GFF1585 at 231.949 kb on + strand, within GFF1585 at 231.949 kb on + strand, within GFF1585 at 231.949 kb on + strand, within GFF1585 at 231.949 kb on + strand, within GFF1585 at 231.950 kb on - strand, within GFF1585 at 231.950 kb on - strand, within GFF1585 at 231.950 kb on - strand, within GFF1585 at 231.950 kb on - strand, within GFF1585 at 232.115 kb on + strand at 232.116 kb on - strand at 232.128 kb on + strand at 232.181 kb on + strand at 232.182 kb on - strand at 232.182 kb on - strand at 232.284 kb on - strand, within GFF1586 at 232.319 kb on - strand, within GFF1586
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 229,625 - GFF1583 0.33 +0.5 229,625 - GFF1583 0.33 +0.4 229,625 - GFF1583 0.33 +0.2 229,813 + GFF1583 0.55 -0.0 229,813 + GFF1583 0.55 -0.9 229,813 + GFF1583 0.55 -0.3 229,813 + GFF1583 0.55 +1.8 229,816 + GFF1583 0.55 +0.5 229,978 + GFF1583 0.73 -0.4 230,065 + GFF1583 0.83 -0.1 230,065 + GFF1583 0.83 -0.2 230,066 - GFF1583 0.83 +0.2 230,066 - GFF1583 0.83 +0.2 230,156 - -1.3 230,156 - +0.6 230,156 - +0.6 230,156 - +1.0 230,156 - +1.1 230,156 - +0.6 230,156 - +0.3 230,239 + -0.1 230,339 - +0.3 230,449 + GFF1584 0.12 +0.3 230,465 + GFF1584 0.13 +0.0 230,466 - GFF1584 0.13 -0.2 230,466 - GFF1584 0.13 +0.2 230,573 + GFF1584 0.21 +0.1 230,573 + GFF1584 0.21 +1.0 230,574 - GFF1584 0.21 +0.5 230,574 - GFF1584 0.21 +0.8 230,574 - GFF1584 0.21 +0.2 230,574 - GFF1584 0.21 +1.0 230,574 - GFF1584 0.21 -0.8 230,574 - GFF1584 0.21 -1.0 230,574 - GFF1584 0.21 -0.3 230,574 - GFF1584 0.21 -0.2 230,574 - GFF1584 0.21 -0.4 230,574 - GFF1584 0.21 +0.5 230,601 - GFF1584 0.23 -0.8 230,601 - GFF1584 0.23 +0.5 230,711 + GFF1584 0.32 -0.5 230,711 + GFF1584 0.32 -0.3 230,712 - GFF1584 0.32 +0.5 230,712 - GFF1584 0.32 -0.2 230,714 + GFF1584 0.32 -0.3 230,744 + GFF1584 0.34 +0.1 230,744 + GFF1584 0.34 -0.9 230,745 - GFF1584 0.34 -0.2 230,745 - GFF1584 0.34 +0.1 230,849 + GFF1584 0.42 -1.0 230,849 + GFF1584 0.42 +0.6 230,850 - GFF1584 0.42 -0.1 230,850 - GFF1584 0.42 -1.4 230,954 + GFF1584 0.50 -0.1 231,020 + GFF1584 0.56 +0.5 231,020 + GFF1584 0.56 -1.2 231,020 + GFF1584 0.56 -0.4 231,020 + GFF1584 0.56 +0.6 231,021 - GFF1584 0.56 +1.2 231,021 - GFF1584 0.56 -0.7 231,021 - GFF1584 0.56 -0.4 231,021 - GFF1584 0.56 -0.8 231,131 + GFF1584 0.64 -0.4 231,132 - GFF1584 0.64 -0.8 231,150 - GFF1584 0.66 +0.4 231,194 + GFF1584 0.69 +1.3 231,194 + GFF1584 0.69 +0.2 231,194 + GFF1584 0.69 -0.1 231,195 - GFF1584 0.69 -0.2 231,472 + -0.1 231,472 + -0.2 231,473 - +0.1 231,473 - -0.6 231,591 + -0.7 231,591 + -0.4 231,592 - -0.6 231,676 + -0.0 231,677 - -0.5 231,924 + GFF1585 0.16 -0.3 231,925 - GFF1585 0.17 +0.5 231,949 + GFF1585 0.28 -0.4 231,949 + GFF1585 0.28 -1.3 231,949 + GFF1585 0.28 +0.0 231,949 + GFF1585 0.28 -0.8 231,949 + GFF1585 0.28 -0.6 231,949 + GFF1585 0.28 +0.1 231,950 - GFF1585 0.29 +0.1 231,950 - GFF1585 0.29 -1.8 231,950 - GFF1585 0.29 -0.5 231,950 - GFF1585 0.29 -0.3 232,115 + +0.6 232,116 - +0.5 232,128 + -0.1 232,181 + +0.9 232,182 - +0.4 232,182 - -0.8 232,284 - GFF1586 0.20 -0.9 232,319 - GFF1586 0.24 +0.1
Or see this region's nucleotide sequence