Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1571 and GFF1572 are separated by 407 nucleotides GFF1572 and GFF1573 are separated by 3 nucleotides GFF1573 and GFF1574 overlap by 17 nucleotides
GFF1571 - hypothetical protein, at 216,078 to 217,184
GFF1571
GFF1572 - hypothetical protein, at 217,592 to 217,909
GFF1572
GFF1573 - Multidrug resistance protein MdtN, at 217,913 to 218,983
GFF1573
GFF1574 - hypothetical protein, at 218,967 to 220,853
GFF1574
Position (kb) 217
218
219 Strain fitness (log2 ratio) -2
-1
0
1
2 at 216.917 kb on + strand, within GFF1571 at 216.917 kb on + strand, within GFF1571 at 216.918 kb on - strand, within GFF1571 at 216.918 kb on - strand, within GFF1571 at 216.933 kb on + strand, within GFF1571 at 216.934 kb on - strand, within GFF1571 at 217.033 kb on + strand, within GFF1571 at 217.091 kb on - strand at 217.091 kb on - strand at 217.091 kb on - strand at 217.091 kb on - strand at 217.102 kb on + strand at 217.103 kb on - strand at 217.141 kb on + strand at 217.165 kb on + strand at 217.166 kb on - strand at 217.355 kb on - strand at 217.506 kb on + strand at 217.506 kb on + strand at 217.507 kb on - strand at 217.736 kb on + strand, within GFF1572 at 217.850 kb on + strand, within GFF1572 at 217.850 kb on + strand, within GFF1572 at 217.850 kb on + strand, within GFF1572 at 217.851 kb on - strand, within GFF1572 at 217.851 kb on - strand, within GFF1572 at 217.853 kb on - strand, within GFF1572 at 217.882 kb on - strand at 217.882 kb on - strand at 218.027 kb on + strand, within GFF1573 at 218.027 kb on + strand, within GFF1573 at 218.027 kb on + strand, within GFF1573 at 218.027 kb on + strand, within GFF1573 at 218.027 kb on + strand, within GFF1573 at 218.027 kb on + strand, within GFF1573 at 218.028 kb on - strand, within GFF1573 at 218.028 kb on - strand, within GFF1573 at 218.028 kb on - strand, within GFF1573 at 218.028 kb on - strand, within GFF1573 at 218.093 kb on - strand, within GFF1573 at 218.093 kb on - strand, within GFF1573 at 218.192 kb on + strand, within GFF1573 at 218.192 kb on + strand, within GFF1573 at 218.384 kb on + strand, within GFF1573 at 218.385 kb on - strand, within GFF1573 at 218.385 kb on - strand, within GFF1573 at 218.385 kb on - strand, within GFF1573 at 218.744 kb on + strand, within GFF1573 at 218.744 kb on + strand, within GFF1573 at 218.744 kb on + strand, within GFF1573 at 218.744 kb on + strand, within GFF1573 at 218.745 kb on - strand, within GFF1573 at 218.745 kb on - strand, within GFF1573 at 218.745 kb on - strand, within GFF1573 at 219.112 kb on - strand at 219.138 kb on + strand at 219.138 kb on + strand at 219.138 kb on + strand at 219.138 kb on + strand at 219.432 kb on + strand, within GFF1574 at 219.432 kb on + strand, within GFF1574 at 219.432 kb on + strand, within GFF1574 at 219.432 kb on + strand, within GFF1574 at 219.433 kb on - strand, within GFF1574 at 219.711 kb on + strand, within GFF1574 at 219.712 kb on - strand, within GFF1574 at 219.854 kb on - strand, within GFF1574 at 219.854 kb on - strand, within GFF1574 at 219.854 kb on - strand, within GFF1574 at 219.854 kb on - strand, within GFF1574 at 219.981 kb on + strand, within GFF1574 at 219.982 kb on - strand, within GFF1574
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 216,917 + GFF1571 0.76 +0.3 216,917 + GFF1571 0.76 +0.2 216,918 - GFF1571 0.76 +0.2 216,918 - GFF1571 0.76 -0.7 216,933 + GFF1571 0.77 -0.2 216,934 - GFF1571 0.77 -0.6 217,033 + GFF1571 0.86 +1.1 217,091 - -0.1 217,091 - -0.4 217,091 - +0.1 217,091 - -0.1 217,102 + +0.5 217,103 - -0.1 217,141 + -1.5 217,165 + -1.0 217,166 - -0.4 217,355 - -1.0 217,506 + -0.9 217,506 + +0.9 217,507 - -0.8 217,736 + GFF1572 0.45 -0.1 217,850 + GFF1572 0.81 -1.1 217,850 + GFF1572 0.81 -0.3 217,850 + GFF1572 0.81 -1.6 217,851 - GFF1572 0.81 -0.0 217,851 - GFF1572 0.81 -0.5 217,853 - GFF1572 0.82 +0.7 217,882 - -0.3 217,882 - +0.6 218,027 + GFF1573 0.11 +0.0 218,027 + GFF1573 0.11 +0.5 218,027 + GFF1573 0.11 -0.3 218,027 + GFF1573 0.11 +1.1 218,027 + GFF1573 0.11 -0.2 218,027 + GFF1573 0.11 -0.1 218,028 - GFF1573 0.11 -0.3 218,028 - GFF1573 0.11 -0.6 218,028 - GFF1573 0.11 -0.5 218,028 - GFF1573 0.11 -0.4 218,093 - GFF1573 0.17 -0.7 218,093 - GFF1573 0.17 +1.4 218,192 + GFF1573 0.26 +0.3 218,192 + GFF1573 0.26 -0.1 218,384 + GFF1573 0.44 -0.4 218,385 - GFF1573 0.44 +1.8 218,385 - GFF1573 0.44 -0.7 218,385 - GFF1573 0.44 -0.4 218,744 + GFF1573 0.78 -0.4 218,744 + GFF1573 0.78 -0.4 218,744 + GFF1573 0.78 +1.3 218,744 + GFF1573 0.78 +1.1 218,745 - GFF1573 0.78 +0.3 218,745 - GFF1573 0.78 +0.1 218,745 - GFF1573 0.78 -0.4 219,112 - +0.4 219,138 + +0.3 219,138 + +0.8 219,138 + +0.2 219,138 + -2.0 219,432 + GFF1574 0.25 +0.5 219,432 + GFF1574 0.25 -0.3 219,432 + GFF1574 0.25 -0.6 219,432 + GFF1574 0.25 +0.1 219,433 - GFF1574 0.25 -0.3 219,711 + GFF1574 0.39 +0.8 219,712 - GFF1574 0.39 -0.3 219,854 - GFF1574 0.47 -0.9 219,854 - GFF1574 0.47 +0.8 219,854 - GFF1574 0.47 -0.5 219,854 - GFF1574 0.47 +0.1 219,981 + GFF1574 0.54 +1.1 219,982 - GFF1574 0.54 -0.1
Or see this region's nucleotide sequence