Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1568 and GFF1569 are separated by 730 nucleotides GFF1569 and GFF1570 are separated by 21 nucleotides
GFF1568 - Glutaminase 1, at 211,951 to 212,946
GFF1568
GFF1569 - hypothetical protein, at 213,677 to 214,648
GFF1569
GFF1570 - Proline/betaine transporter, at 214,670 to 215,983
GFF1570
Position (kb) 213
214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 212.738 kb on + strand, within GFF1568 at 212.738 kb on + strand, within GFF1568 at 212.738 kb on + strand, within GFF1568 at 212.739 kb on - strand, within GFF1568 at 212.739 kb on - strand, within GFF1568 at 212.910 kb on + strand at 212.910 kb on + strand at 212.910 kb on + strand at 212.911 kb on - strand at 212.911 kb on - strand at 212.911 kb on - strand at 212.912 kb on + strand at 212.912 kb on + strand at 213.060 kb on - strand at 213.124 kb on - strand at 213.197 kb on + strand at 213.197 kb on + strand at 213.197 kb on + strand at 213.468 kb on - strand at 213.504 kb on - strand at 213.506 kb on - strand at 213.549 kb on + strand at 213.572 kb on + strand at 213.573 kb on - strand at 213.586 kb on + strand at 213.587 kb on - strand at 213.745 kb on - strand at 213.843 kb on + strand, within GFF1569 at 213.866 kb on + strand, within GFF1569 at 213.866 kb on + strand, within GFF1569 at 213.867 kb on - strand, within GFF1569 at 213.867 kb on - strand, within GFF1569 at 213.926 kb on + strand, within GFF1569 at 213.926 kb on + strand, within GFF1569 at 213.926 kb on + strand, within GFF1569 at 213.926 kb on + strand, within GFF1569 at 213.927 kb on - strand, within GFF1569 at 213.927 kb on - strand, within GFF1569 at 213.927 kb on - strand, within GFF1569 at 213.989 kb on + strand, within GFF1569 at 213.989 kb on + strand, within GFF1569 at 214.211 kb on + strand, within GFF1569 at 214.211 kb on + strand, within GFF1569 at 214.212 kb on - strand, within GFF1569 at 214.368 kb on - strand, within GFF1569 at 214.368 kb on - strand, within GFF1569 at 214.542 kb on - strand, within GFF1569 at 214.571 kb on + strand at 214.571 kb on + strand at 214.571 kb on + strand at 214.572 kb on - strand at 214.572 kb on - strand at 214.572 kb on - strand at 214.572 kb on - strand at 214.572 kb on - strand at 214.581 kb on - strand at 214.581 kb on - strand at 214.581 kb on - strand at 214.601 kb on + strand at 214.601 kb on + strand at 214.749 kb on + strand at 214.749 kb on + strand at 214.750 kb on - strand at 214.843 kb on - strand, within GFF1570 at 214.882 kb on - strand, within GFF1570 at 215.181 kb on + strand, within GFF1570 at 215.182 kb on - strand, within GFF1570 at 215.196 kb on + strand, within GFF1570 at 215.197 kb on - strand, within GFF1570 at 215.197 kb on - strand, within GFF1570 at 215.197 kb on - strand, within GFF1570 at 215.199 kb on + strand, within GFF1570 at 215.200 kb on - strand, within GFF1570 at 215.200 kb on - strand, within GFF1570 at 215.200 kb on - strand, within GFF1570
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 212,738 + GFF1568 0.79 -3.1 212,738 + GFF1568 0.79 +0.2 212,738 + GFF1568 0.79 -0.2 212,739 - GFF1568 0.79 -0.2 212,739 - GFF1568 0.79 -1.1 212,910 + -0.0 212,910 + -0.1 212,910 + -0.3 212,911 - +0.3 212,911 - +0.3 212,911 - -0.4 212,912 + -0.3 212,912 + -0.4 213,060 - -0.1 213,124 - +0.4 213,197 + -0.2 213,197 + -0.3 213,197 + -0.7 213,468 - +0.2 213,504 - +1.5 213,506 - +0.1 213,549 + -0.2 213,572 + -0.8 213,573 - -0.8 213,586 + -0.2 213,587 - +0.2 213,745 - -0.0 213,843 + GFF1569 0.17 -1.1 213,866 + GFF1569 0.19 -0.6 213,866 + GFF1569 0.19 +0.2 213,867 - GFF1569 0.20 -0.9 213,867 - GFF1569 0.20 -0.4 213,926 + GFF1569 0.26 +0.1 213,926 + GFF1569 0.26 -1.8 213,926 + GFF1569 0.26 +0.9 213,926 + GFF1569 0.26 -1.0 213,927 - GFF1569 0.26 -0.5 213,927 - GFF1569 0.26 -0.1 213,927 - GFF1569 0.26 -0.5 213,989 + GFF1569 0.32 -0.0 213,989 + GFF1569 0.32 +0.2 214,211 + GFF1569 0.55 -1.2 214,211 + GFF1569 0.55 -0.1 214,212 - GFF1569 0.55 -0.4 214,368 - GFF1569 0.71 -0.4 214,368 - GFF1569 0.71 +0.2 214,542 - GFF1569 0.89 +0.1 214,571 + -0.7 214,571 + +0.4 214,571 + -0.1 214,572 - +1.7 214,572 - +0.1 214,572 - -0.8 214,572 - -0.4 214,572 - -1.3 214,581 - -0.2 214,581 - +0.8 214,581 - -0.2 214,601 + -0.7 214,601 + -0.6 214,749 + -0.2 214,749 + +0.6 214,750 - +0.3 214,843 - GFF1570 0.13 -1.1 214,882 - GFF1570 0.16 +0.1 215,181 + GFF1570 0.39 +0.1 215,182 - GFF1570 0.39 +0.9 215,196 + GFF1570 0.40 -0.4 215,197 - GFF1570 0.40 +0.5 215,197 - GFF1570 0.40 -1.2 215,197 - GFF1570 0.40 +0.5 215,199 + GFF1570 0.40 -0.2 215,200 - GFF1570 0.40 -0.0 215,200 - GFF1570 0.40 -0.3 215,200 - GFF1570 0.40 +0.3
Or see this region's nucleotide sequence