Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1534 and GFF1535 overlap by 4 nucleotides GFF1535 and GFF1536 are separated by 3 nucleotides
GFF1534 - Enterobactin exporter EntS, at 175,378 to 176,988
GFF1534
GFF1535 - hypothetical protein, at 176,985 to 177,422
GFF1535
GFF1536 - Imidazolonepropionase, at 177,426 to 179,291
GFF1536
Position (kb) 176
177
178 Strain fitness (log2 ratio) -2
-1
0
1 at 176.183 kb on + strand, within GFF1534 at 176.184 kb on - strand, within GFF1534 at 176.186 kb on + strand, within GFF1534 at 176.313 kb on - strand, within GFF1534 at 176.414 kb on + strand, within GFF1534 at 176.414 kb on + strand, within GFF1534 at 176.414 kb on + strand, within GFF1534 at 176.435 kb on + strand, within GFF1534 at 176.649 kb on + strand, within GFF1534 at 176.649 kb on + strand, within GFF1534 at 176.649 kb on + strand, within GFF1534 at 176.649 kb on + strand, within GFF1534 at 176.649 kb on + strand, within GFF1534 at 176.649 kb on + strand, within GFF1534 at 176.649 kb on + strand, within GFF1534 at 176.650 kb on - strand, within GFF1534 at 176.650 kb on - strand, within GFF1534 at 176.650 kb on - strand, within GFF1534 at 176.650 kb on - strand, within GFF1534 at 176.650 kb on - strand, within GFF1534 at 176.650 kb on - strand, within GFF1534 at 177.022 kb on + strand at 177.023 kb on - strand at 177.023 kb on - strand at 177.328 kb on + strand, within GFF1535 at 177.601 kb on + strand at 177.601 kb on + strand at 177.602 kb on - strand at 177.757 kb on + strand, within GFF1536 at 177.757 kb on + strand, within GFF1536 at 177.758 kb on - strand, within GFF1536 at 177.758 kb on - strand, within GFF1536 at 177.899 kb on - strand, within GFF1536 at 177.960 kb on - strand, within GFF1536 at 177.960 kb on - strand, within GFF1536 at 177.960 kb on - strand, within GFF1536 at 177.961 kb on + strand, within GFF1536 at 177.961 kb on + strand, within GFF1536 at 177.961 kb on + strand, within GFF1536 at 177.962 kb on - strand, within GFF1536 at 177.962 kb on - strand, within GFF1536 at 177.962 kb on - strand, within GFF1536 at 177.962 kb on - strand, within GFF1536 at 178.075 kb on + strand, within GFF1536 at 178.076 kb on - strand, within GFF1536 at 178.076 kb on - strand, within GFF1536 at 178.087 kb on + strand, within GFF1536 at 178.088 kb on - strand, within GFF1536 at 178.088 kb on - strand, within GFF1536 at 178.088 kb on - strand, within GFF1536 at 178.088 kb on - strand, within GFF1536 at 178.255 kb on + strand, within GFF1536 at 178.255 kb on + strand, within GFF1536 at 178.255 kb on + strand, within GFF1536 at 178.255 kb on + strand, within GFF1536 at 178.256 kb on - strand, within GFF1536 at 178.256 kb on - strand, within GFF1536 at 178.384 kb on + strand, within GFF1536 at 178.385 kb on - strand, within GFF1536 at 178.418 kb on - strand, within GFF1536 at 178.418 kb on - strand, within GFF1536
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 176,183 + GFF1534 0.50 -0.1 176,184 - GFF1534 0.50 -0.1 176,186 + GFF1534 0.50 -0.6 176,313 - GFF1534 0.58 -0.1 176,414 + GFF1534 0.64 -1.1 176,414 + GFF1534 0.64 -0.5 176,414 + GFF1534 0.64 -0.2 176,435 + GFF1534 0.66 -0.1 176,649 + GFF1534 0.79 -0.1 176,649 + GFF1534 0.79 -0.6 176,649 + GFF1534 0.79 -0.5 176,649 + GFF1534 0.79 -0.3 176,649 + GFF1534 0.79 -0.5 176,649 + GFF1534 0.79 -0.6 176,649 + GFF1534 0.79 +0.4 176,650 - GFF1534 0.79 +0.5 176,650 - GFF1534 0.79 -0.3 176,650 - GFF1534 0.79 -0.5 176,650 - GFF1534 0.79 +0.0 176,650 - GFF1534 0.79 -0.6 176,650 - GFF1534 0.79 -0.4 177,022 + -0.1 177,023 - +0.0 177,023 - +0.2 177,328 + GFF1535 0.78 -0.3 177,601 + -0.5 177,601 + +0.4 177,602 - -0.2 177,757 + GFF1536 0.18 -0.4 177,757 + GFF1536 0.18 -0.5 177,758 - GFF1536 0.18 +0.1 177,758 - GFF1536 0.18 -0.2 177,899 - GFF1536 0.25 -0.1 177,960 - GFF1536 0.29 -0.5 177,960 - GFF1536 0.29 -0.4 177,960 - GFF1536 0.29 +0.3 177,961 + GFF1536 0.29 -0.0 177,961 + GFF1536 0.29 +1.3 177,961 + GFF1536 0.29 -1.7 177,962 - GFF1536 0.29 +0.0 177,962 - GFF1536 0.29 -1.2 177,962 - GFF1536 0.29 -1.7 177,962 - GFF1536 0.29 +0.5 178,075 + GFF1536 0.35 +0.5 178,076 - GFF1536 0.35 +0.4 178,076 - GFF1536 0.35 -0.5 178,087 + GFF1536 0.35 -0.2 178,088 - GFF1536 0.35 -0.4 178,088 - GFF1536 0.35 -0.4 178,088 - GFF1536 0.35 -0.4 178,088 - GFF1536 0.35 -1.8 178,255 + GFF1536 0.44 -0.3 178,255 + GFF1536 0.44 +1.0 178,255 + GFF1536 0.44 -0.1 178,255 + GFF1536 0.44 -0.4 178,256 - GFF1536 0.44 +0.4 178,256 - GFF1536 0.44 -0.8 178,384 + GFF1536 0.51 -0.2 178,385 - GFF1536 0.51 +0.0 178,418 - GFF1536 0.53 +0.6 178,418 - GFF1536 0.53 -0.1
Or see this region's nucleotide sequence