Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1528 and GFF1529 are separated by 187 nucleotides GFF1529 and GFF1530 are separated by 4 nucleotides GFF1530 and GFF1531 are separated by 75 nucleotides
GFF1528 - putative sulfate transporter, at 167,432 to 169,147
GFF1528
GFF1529 - hypothetical protein, at 169,335 to 169,829
GFF1529
GFF1530 - hypothetical protein, at 169,834 to 171,069
GFF1530
GFF1531 - Dihydroxy-acid dehydratase, at 171,145 to 172,839
GFF1531
Position (kb) 169
170
171
172 Strain fitness (log2 ratio) -2
-1
0
1
2 at 168.966 kb on + strand, within GFF1528 at 168.967 kb on - strand, within GFF1528 at 168.967 kb on - strand, within GFF1528 at 168.967 kb on - strand, within GFF1528 at 169.084 kb on - strand at 169.286 kb on - strand at 169.505 kb on + strand, within GFF1529 at 169.533 kb on + strand, within GFF1529 at 169.533 kb on + strand, within GFF1529 at 169.533 kb on + strand, within GFF1529 at 169.677 kb on + strand, within GFF1529 at 169.677 kb on + strand, within GFF1529 at 169.835 kb on + strand at 169.835 kb on + strand at 169.836 kb on - strand at 169.910 kb on + strand at 169.910 kb on + strand at 169.910 kb on + strand at 169.910 kb on + strand at 169.910 kb on + strand at 169.911 kb on - strand at 169.965 kb on + strand, within GFF1530 at 169.965 kb on + strand, within GFF1530 at 169.965 kb on + strand, within GFF1530 at 169.965 kb on + strand, within GFF1530 at 169.965 kb on + strand, within GFF1530 at 169.966 kb on - strand, within GFF1530 at 169.966 kb on - strand, within GFF1530 at 170.099 kb on + strand, within GFF1530 at 170.099 kb on + strand, within GFF1530 at 170.117 kb on + strand, within GFF1530 at 170.117 kb on + strand, within GFF1530 at 170.118 kb on - strand, within GFF1530 at 170.118 kb on - strand, within GFF1530 at 170.137 kb on - strand, within GFF1530 at 170.210 kb on + strand, within GFF1530 at 170.211 kb on - strand, within GFF1530 at 170.211 kb on - strand, within GFF1530 at 170.211 kb on - strand, within GFF1530 at 170.265 kb on + strand, within GFF1530 at 170.282 kb on - strand, within GFF1530 at 170.525 kb on + strand, within GFF1530 at 170.525 kb on + strand, within GFF1530 at 170.526 kb on - strand, within GFF1530 at 170.526 kb on - strand, within GFF1530 at 170.543 kb on + strand, within GFF1530 at 170.544 kb on - strand, within GFF1530 at 170.544 kb on - strand, within GFF1530 at 170.550 kb on + strand, within GFF1530 at 170.551 kb on - strand, within GFF1530 at 170.586 kb on + strand, within GFF1530 at 170.587 kb on - strand, within GFF1530 at 170.609 kb on + strand, within GFF1530 at 170.609 kb on + strand, within GFF1530 at 170.609 kb on + strand, within GFF1530 at 170.609 kb on + strand, within GFF1530 at 170.610 kb on - strand, within GFF1530 at 171.204 kb on - strand at 171.204 kb on - strand at 171.320 kb on + strand, within GFF1531
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 168,966 + GFF1528 0.89 +0.6 168,967 - GFF1528 0.89 -1.0 168,967 - GFF1528 0.89 +0.1 168,967 - GFF1528 0.89 -1.1 169,084 - -0.3 169,286 - -0.6 169,505 + GFF1529 0.34 -0.6 169,533 + GFF1529 0.40 -0.7 169,533 + GFF1529 0.40 -0.4 169,533 + GFF1529 0.40 -2.3 169,677 + GFF1529 0.69 -0.8 169,677 + GFF1529 0.69 +0.6 169,835 + +0.1 169,835 + +0.3 169,836 - -0.1 169,910 + -0.2 169,910 + -0.2 169,910 + +1.1 169,910 + +0.0 169,910 + -0.0 169,911 - -0.4 169,965 + GFF1530 0.11 -0.1 169,965 + GFF1530 0.11 -0.5 169,965 + GFF1530 0.11 +0.5 169,965 + GFF1530 0.11 +0.5 169,965 + GFF1530 0.11 -0.7 169,966 - GFF1530 0.11 +0.1 169,966 - GFF1530 0.11 -0.3 170,099 + GFF1530 0.21 +0.8 170,099 + GFF1530 0.21 -0.7 170,117 + GFF1530 0.23 +0.3 170,117 + GFF1530 0.23 +0.3 170,118 - GFF1530 0.23 -0.6 170,118 - GFF1530 0.23 +0.8 170,137 - GFF1530 0.25 -0.1 170,210 + GFF1530 0.30 -0.2 170,211 - GFF1530 0.31 +0.0 170,211 - GFF1530 0.31 -0.4 170,211 - GFF1530 0.31 -1.8 170,265 + GFF1530 0.35 -0.6 170,282 - GFF1530 0.36 +0.1 170,525 + GFF1530 0.56 -0.1 170,525 + GFF1530 0.56 -0.9 170,526 - GFF1530 0.56 +0.3 170,526 - GFF1530 0.56 -0.6 170,543 + GFF1530 0.57 -0.1 170,544 - GFF1530 0.57 -0.6 170,544 - GFF1530 0.57 +0.1 170,550 + GFF1530 0.58 +1.1 170,551 - GFF1530 0.58 -1.0 170,586 + GFF1530 0.61 +0.6 170,587 - GFF1530 0.61 -0.2 170,609 + GFF1530 0.63 +0.1 170,609 + GFF1530 0.63 +1.3 170,609 + GFF1530 0.63 +0.6 170,609 + GFF1530 0.63 +1.8 170,610 - GFF1530 0.63 +0.5 171,204 - -0.5 171,204 - +0.3 171,320 + GFF1531 0.10 -0.2
Or see this region's nucleotide sequence