Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1463 and GFF1464 are separated by 4 nucleotides GFF1464 and GFF1465 are separated by 97 nucleotides GFF1465 and GFF1466 are separated by 84 nucleotides
GFF1463 - Sulfide dehydrogenase [flavocytochrome c] flavoprotein chain, at 102,425 to 103,696
GFF1463
GFF1464 - hypothetical protein, at 103,701 to 104,219
GFF1464
GFF1465 - Cytochrome c2, at 104,317 to 104,712
GFF1465
GFF1466 - hypothetical protein, at 104,797 to 105,570
GFF1466
Position (kb) 103
104
105 Strain fitness (log2 ratio) -1
0
1 at 102.888 kb on + strand, within GFF1463 at 102.985 kb on - strand, within GFF1463 at 103.055 kb on - strand, within GFF1463 at 103.055 kb on - strand, within GFF1463 at 103.055 kb on - strand, within GFF1463 at 103.113 kb on + strand, within GFF1463 at 103.281 kb on + strand, within GFF1463 at 103.320 kb on + strand, within GFF1463 at 103.320 kb on + strand, within GFF1463 at 103.320 kb on + strand, within GFF1463 at 103.321 kb on - strand, within GFF1463 at 103.494 kb on + strand, within GFF1463 at 103.494 kb on + strand, within GFF1463 at 103.495 kb on - strand, within GFF1463 at 103.661 kb on + strand at 103.661 kb on + strand at 103.832 kb on - strand, within GFF1464 at 103.832 kb on - strand, within GFF1464 at 103.832 kb on - strand, within GFF1464 at 103.843 kb on + strand, within GFF1464 at 103.844 kb on - strand, within GFF1464 at 103.844 kb on - strand, within GFF1464 at 103.844 kb on - strand, within GFF1464 at 104.014 kb on + strand, within GFF1464 at 104.014 kb on + strand, within GFF1464 at 104.065 kb on + strand, within GFF1464 at 104.065 kb on + strand, within GFF1464 at 104.121 kb on + strand, within GFF1464 at 104.121 kb on + strand, within GFF1464 at 104.318 kb on + strand at 104.319 kb on - strand at 104.319 kb on - strand at 104.391 kb on + strand, within GFF1465 at 104.445 kb on - strand, within GFF1465 at 104.516 kb on + strand, within GFF1465 at 104.784 kb on + strand at 104.785 kb on - strand at 105.038 kb on + strand, within GFF1466 at 105.039 kb on - strand, within GFF1466 at 105.110 kb on + strand, within GFF1466 at 105.110 kb on + strand, within GFF1466 at 105.111 kb on - strand, within GFF1466 at 105.111 kb on - strand, within GFF1466 at 105.116 kb on + strand, within GFF1466 at 105.116 kb on + strand, within GFF1466 at 105.116 kb on + strand, within GFF1466 at 105.117 kb on - strand, within GFF1466 at 105.131 kb on + strand, within GFF1466
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 102,888 + GFF1463 0.36 +0.4 102,985 - GFF1463 0.44 +0.5 103,055 - GFF1463 0.50 -0.4 103,055 - GFF1463 0.50 +1.1 103,055 - GFF1463 0.50 -0.0 103,113 + GFF1463 0.54 -0.1 103,281 + GFF1463 0.67 +0.0 103,320 + GFF1463 0.70 +0.2 103,320 + GFF1463 0.70 +0.1 103,320 + GFF1463 0.70 -0.3 103,321 - GFF1463 0.70 -0.2 103,494 + GFF1463 0.84 -0.4 103,494 + GFF1463 0.84 -0.1 103,495 - GFF1463 0.84 +0.4 103,661 + +0.2 103,661 + -1.3 103,832 - GFF1464 0.25 -0.3 103,832 - GFF1464 0.25 -0.8 103,832 - GFF1464 0.25 +0.1 103,843 + GFF1464 0.27 +0.1 103,844 - GFF1464 0.28 -0.1 103,844 - GFF1464 0.28 -0.1 103,844 - GFF1464 0.28 -0.9 104,014 + GFF1464 0.60 +0.1 104,014 + GFF1464 0.60 +0.8 104,065 + GFF1464 0.70 -0.2 104,065 + GFF1464 0.70 +0.1 104,121 + GFF1464 0.81 +0.2 104,121 + GFF1464 0.81 -0.1 104,318 + -0.7 104,319 - +0.3 104,319 - +0.1 104,391 + GFF1465 0.19 +0.1 104,445 - GFF1465 0.32 -0.8 104,516 + GFF1465 0.50 +1.1 104,784 + +0.1 104,785 - +0.3 105,038 + GFF1466 0.31 +1.1 105,039 - GFF1466 0.31 +0.5 105,110 + GFF1466 0.40 +1.5 105,110 + GFF1466 0.40 -0.1 105,111 - GFF1466 0.41 -1.1 105,111 - GFF1466 0.41 +0.2 105,116 + GFF1466 0.41 +0.8 105,116 + GFF1466 0.41 -1.2 105,116 + GFF1466 0.41 -0.5 105,117 - GFF1466 0.41 -0.0 105,131 + GFF1466 0.43 +0.4
Or see this region's nucleotide sequence