Strain Fitness in Xanthobacter sp. DMC5 around GFF1450

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1448 and GFF1449 are separated by 75 nucleotidesGFF1449 and GFF1450 are separated by 61 nucleotidesGFF1450 and GFF1451 are separated by 175 nucleotidesGFF1451 and GFF1452 are separated by 109 nucleotides GFF1448 - HTH-type transcriptional regulator DmlR, at 71,571 to 72,485 GFF1448 GFF1449 - hypothetical protein, at 72,561 to 72,875 GFF1449 GFF1450 - hypothetical protein, at 72,937 to 75,900 GFF1450 GFF1451 - hypothetical protein, at 76,076 to 76,570 GFF1451 GFF1452 - hypothetical protein, at 76,680 to 81,659 GFF1452 Position (kb) 72 73 74 75 76Strain fitness (log2 ratio) -2 -1 0 1at 71.961 kb on + strand, within GFF1448at 72.084 kb on + strand, within GFF1448at 72.085 kb on - strand, within GFF1448at 72.148 kb on - strand, within GFF1448at 72.203 kb on + strand, within GFF1448at 72.203 kb on + strand, within GFF1448at 72.204 kb on - strand, within GFF1448at 72.204 kb on - strand, within GFF1448at 72.208 kb on + strand, within GFF1448at 72.208 kb on + strand, within GFF1448at 72.297 kb on + strand, within GFF1448at 72.297 kb on + strand, within GFF1448at 72.298 kb on - strand, within GFF1448at 72.298 kb on - strand, within GFF1448at 72.384 kb on + strand, within GFF1448at 72.384 kb on + strand, within GFF1448at 72.444 kb on + strandat 72.444 kb on + strandat 72.648 kb on + strand, within GFF1449at 72.717 kb on + strand, within GFF1449at 72.717 kb on + strand, within GFF1449at 72.717 kb on + strand, within GFF1449at 72.718 kb on - strand, within GFF1449at 72.718 kb on - strand, within GFF1449at 72.747 kb on + strand, within GFF1449at 72.747 kb on + strand, within GFF1449at 72.748 kb on - strand, within GFF1449at 72.765 kb on + strand, within GFF1449at 72.765 kb on + strand, within GFF1449at 72.765 kb on + strand, within GFF1449at 72.766 kb on - strand, within GFF1449at 72.766 kb on - strand, within GFF1449at 72.766 kb on - strand, within GFF1449at 73.040 kb on + strandat 73.040 kb on + strandat 73.041 kb on - strandat 73.041 kb on - strandat 73.041 kb on - strandat 73.041 kb on - strandat 73.110 kb on + strandat 73.233 kb on - strandat 73.247 kb on + strand, within GFF1450at 73.673 kb on + strand, within GFF1450at 73.766 kb on + strand, within GFF1450at 73.775 kb on + strand, within GFF1450at 73.775 kb on + strand, within GFF1450at 73.881 kb on + strand, within GFF1450at 73.881 kb on + strand, within GFF1450at 73.881 kb on + strand, within GFF1450at 73.881 kb on + strand, within GFF1450at 73.881 kb on + strand, within GFF1450at 74.144 kb on + strand, within GFF1450at 74.144 kb on + strand, within GFF1450at 74.144 kb on + strand, within GFF1450at 74.145 kb on - strand, within GFF1450at 74.198 kb on + strand, within GFF1450at 74.199 kb on - strand, within GFF1450at 74.199 kb on - strand, within GFF1450at 74.307 kb on - strand, within GFF1450at 74.333 kb on + strand, within GFF1450at 74.333 kb on + strand, within GFF1450at 74.333 kb on + strand, within GFF1450at 74.364 kb on - strand, within GFF1450at 74.444 kb on + strand, within GFF1450at 74.444 kb on + strand, within GFF1450at 74.445 kb on - strand, within GFF1450at 74.449 kb on + strand, within GFF1450at 74.484 kb on + strand, within GFF1450at 74.485 kb on - strand, within GFF1450at 74.485 kb on - strand, within GFF1450at 74.675 kb on + strand, within GFF1450at 74.676 kb on - strand, within GFF1450at 74.850 kb on + strand, within GFF1450at 74.861 kb on + strand, within GFF1450at 74.862 kb on - strand, within GFF1450at 74.892 kb on - strand, within GFF1450at 75.609 kb on - strandat 75.714 kb on + strandat 75.715 kb on - strandat 75.728 kb on + strandat 75.834 kb on - strandat 75.884 kb on + strandat 75.885 kb on - strandat 75.935 kb on + strandat 75.942 kb on + strandat 76.001 kb on - strandat 76.018 kb on + strandat 76.019 kb on - strandat 76.023 kb on + strandat 76.227 kb on + strand, within GFF1451at 76.228 kb on - strand, within GFF1451at 76.228 kb on - strand, within GFF1451at 76.233 kb on + strand, within GFF1451at 76.233 kb on + strand, within GFF1451at 76.383 kb on + strand, within GFF1451at 76.384 kb on - strand, within GFF1451at 76.384 kb on - strand, within GFF1451at 76.384 kb on - strand, within GFF1451at 76.384 kb on - strand, within GFF1451at 76.476 kb on + strand, within GFF1451at 76.476 kb on + strand, within GFF1451at 76.477 kb on - strand, within GFF1451at 76.477 kb on - strand, within GFF1451at 76.477 kb on - strand, within GFF1451at 76.477 kb on - strand, within GFF1451at 76.601 kb on + strandat 76.663 kb on + strandat 76.690 kb on + strandat 76.723 kb on + strandat 76.724 kb on - strandat 76.862 kb on - strandat 76.862 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
71,961 + GFF1448 0.43 -0.1
72,084 + GFF1448 0.56 +1.0
72,085 - GFF1448 0.56 +0.1
72,148 - GFF1448 0.63 -1.4
72,203 + GFF1448 0.69 -0.0
72,203 + GFF1448 0.69 +0.8
72,204 - GFF1448 0.69 +0.1
72,204 - GFF1448 0.69 +0.4
72,208 + GFF1448 0.70 -0.1
72,208 + GFF1448 0.70 -1.1
72,297 + GFF1448 0.79 -0.3
72,297 + GFF1448 0.79 -0.4
72,298 - GFF1448 0.79 -0.9
72,298 - GFF1448 0.79 -0.1
72,384 + GFF1448 0.89 -1.0
72,384 + GFF1448 0.89 -1.2
72,444 + +0.3
72,444 + +0.5
72,648 + GFF1449 0.28 -1.2
72,717 + GFF1449 0.50 -0.7
72,717 + GFF1449 0.50 -0.1
72,717 + GFF1449 0.50 -0.2
72,718 - GFF1449 0.50 +0.4
72,718 - GFF1449 0.50 +0.0
72,747 + GFF1449 0.59 -0.4
72,747 + GFF1449 0.59 +0.2
72,748 - GFF1449 0.59 -0.3
72,765 + GFF1449 0.65 -1.1
72,765 + GFF1449 0.65 +0.3
72,765 + GFF1449 0.65 -0.1
72,766 - GFF1449 0.65 +0.2
72,766 - GFF1449 0.65 -0.0
72,766 - GFF1449 0.65 -0.3
73,040 + -0.5
73,040 + +0.0
73,041 - -0.1
73,041 - -0.8
73,041 - -0.2
73,041 - -1.3
73,110 + -0.3
73,233 - +0.5
73,247 + GFF1450 0.10 -0.9
73,673 + GFF1450 0.25 +0.1
73,766 + GFF1450 0.28 -0.1
73,775 + GFF1450 0.28 -1.9
73,775 + GFF1450 0.28 -0.3
73,881 + GFF1450 0.32 +0.7
73,881 + GFF1450 0.32 +0.2
73,881 + GFF1450 0.32 -0.1
73,881 + GFF1450 0.32 +0.7
73,881 + GFF1450 0.32 +0.1
74,144 + GFF1450 0.41 -0.5
74,144 + GFF1450 0.41 -0.1
74,144 + GFF1450 0.41 -1.1
74,145 - GFF1450 0.41 -0.3
74,198 + GFF1450 0.43 +0.2
74,199 - GFF1450 0.43 +0.8
74,199 - GFF1450 0.43 -0.1
74,307 - GFF1450 0.46 +0.1
74,333 + GFF1450 0.47 -0.8
74,333 + GFF1450 0.47 -0.2
74,333 + GFF1450 0.47 +0.1
74,364 - GFF1450 0.48 +0.5
74,444 + GFF1450 0.51 -0.1
74,444 + GFF1450 0.51 -1.1
74,445 - GFF1450 0.51 +0.1
74,449 + GFF1450 0.51 -0.9
74,484 + GFF1450 0.52 -0.1
74,485 - GFF1450 0.52 +0.5
74,485 - GFF1450 0.52 -0.1
74,675 + GFF1450 0.59 -0.2
74,676 - GFF1450 0.59 +0.6
74,850 + GFF1450 0.65 -0.5
74,861 + GFF1450 0.65 +0.7
74,862 - GFF1450 0.65 +0.2
74,892 - GFF1450 0.66 +0.9
75,609 - +0.5
75,714 + +0.3
75,715 - -0.2
75,728 + +0.0
75,834 - -0.2
75,884 + -0.1
75,885 - -1.3
75,935 + -0.8
75,942 + +0.0
76,001 - -0.7
76,018 + +1.0
76,019 - -1.2
76,023 + -0.3
76,227 + GFF1451 0.31 +0.1
76,228 - GFF1451 0.31 -0.1
76,228 - GFF1451 0.31 +0.5
76,233 + GFF1451 0.32 +0.1
76,233 + GFF1451 0.32 +0.7
76,383 + GFF1451 0.62 +0.6
76,384 - GFF1451 0.62 -0.1
76,384 - GFF1451 0.62 +0.7
76,384 - GFF1451 0.62 +0.3
76,384 - GFF1451 0.62 +1.2
76,476 + GFF1451 0.81 -0.9
76,476 + GFF1451 0.81 +0.1
76,477 - GFF1451 0.81 +0.4
76,477 - GFF1451 0.81 +0.4
76,477 - GFF1451 0.81 +0.4
76,477 - GFF1451 0.81 +0.4
76,601 + +0.3
76,663 + +0.1
76,690 + +0.3
76,723 + +0.5
76,724 - +0.5
76,862 - +0.5
76,862 - -0.1

Or see this region's nucleotide sequence