Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1446 and GFF1447 are separated by 42 nucleotides GFF1447 and GFF1448 are separated by 106 nucleotides GFF1448 and GFF1449 are separated by 75 nucleotides GFF1449 and GFF1450 are separated by 61 nucleotides
GFF1446 - Maleylacetate reductase, at 69,938 to 71,026
GFF1446
GFF1447 - hypothetical protein, at 71,069 to 71,464
GFF1447
GFF1448 - HTH-type transcriptional regulator DmlR, at 71,571 to 72,485
GFF1448
GFF1449 - hypothetical protein, at 72,561 to 72,875
GFF1449
GFF1450 - hypothetical protein, at 72,937 to 75,900
GFF1450
Position (kb) 71
72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 70.572 kb on + strand, within GFF1446 at 70.572 kb on + strand, within GFF1446 at 70.572 kb on + strand, within GFF1446 at 70.572 kb on + strand, within GFF1446 at 70.573 kb on - strand, within GFF1446 at 70.668 kb on + strand, within GFF1446 at 70.668 kb on + strand, within GFF1446 at 70.669 kb on - strand, within GFF1446 at 70.669 kb on - strand, within GFF1446 at 70.669 kb on - strand, within GFF1446 at 70.669 kb on - strand, within GFF1446 at 70.819 kb on + strand, within GFF1446 at 70.820 kb on - strand, within GFF1446 at 70.820 kb on - strand, within GFF1446 at 70.820 kb on - strand, within GFF1446 at 71.007 kb on + strand at 71.007 kb on + strand at 71.008 kb on - strand at 71.008 kb on - strand at 71.166 kb on + strand, within GFF1447 at 71.166 kb on + strand, within GFF1447 at 71.166 kb on + strand, within GFF1447 at 71.166 kb on + strand, within GFF1447 at 71.166 kb on + strand, within GFF1447 at 71.166 kb on + strand, within GFF1447 at 71.166 kb on + strand, within GFF1447 at 71.166 kb on + strand, within GFF1447 at 71.166 kb on + strand, within GFF1447 at 71.166 kb on + strand, within GFF1447 at 71.167 kb on - strand, within GFF1447 at 71.167 kb on - strand, within GFF1447 at 71.167 kb on - strand, within GFF1447 at 71.167 kb on - strand, within GFF1447 at 71.167 kb on - strand, within GFF1447 at 71.241 kb on + strand, within GFF1447 at 71.298 kb on + strand, within GFF1447 at 71.299 kb on - strand, within GFF1447 at 71.481 kb on + strand at 71.481 kb on + strand at 71.482 kb on - strand at 71.482 kb on - strand at 71.570 kb on + strand at 71.766 kb on + strand, within GFF1448 at 71.886 kb on + strand, within GFF1448 at 71.886 kb on + strand, within GFF1448 at 71.886 kb on + strand, within GFF1448 at 71.886 kb on + strand, within GFF1448 at 71.887 kb on - strand, within GFF1448 at 71.887 kb on - strand, within GFF1448 at 71.922 kb on + strand, within GFF1448 at 71.922 kb on + strand, within GFF1448 at 71.961 kb on + strand, within GFF1448 at 72.084 kb on + strand, within GFF1448 at 72.085 kb on - strand, within GFF1448 at 72.148 kb on - strand, within GFF1448 at 72.203 kb on + strand, within GFF1448 at 72.203 kb on + strand, within GFF1448 at 72.204 kb on - strand, within GFF1448 at 72.204 kb on - strand, within GFF1448 at 72.208 kb on + strand, within GFF1448 at 72.208 kb on + strand, within GFF1448 at 72.297 kb on + strand, within GFF1448 at 72.297 kb on + strand, within GFF1448 at 72.298 kb on - strand, within GFF1448 at 72.298 kb on - strand, within GFF1448 at 72.384 kb on + strand, within GFF1448 at 72.384 kb on + strand, within GFF1448 at 72.444 kb on + strand at 72.444 kb on + strand at 72.648 kb on + strand, within GFF1449 at 72.717 kb on + strand, within GFF1449 at 72.717 kb on + strand, within GFF1449 at 72.717 kb on + strand, within GFF1449 at 72.718 kb on - strand, within GFF1449 at 72.718 kb on - strand, within GFF1449 at 72.747 kb on + strand, within GFF1449 at 72.747 kb on + strand, within GFF1449 at 72.748 kb on - strand, within GFF1449 at 72.765 kb on + strand, within GFF1449 at 72.765 kb on + strand, within GFF1449 at 72.765 kb on + strand, within GFF1449 at 72.766 kb on - strand, within GFF1449 at 72.766 kb on - strand, within GFF1449 at 72.766 kb on - strand, within GFF1449 at 73.040 kb on + strand at 73.040 kb on + strand at 73.041 kb on - strand at 73.041 kb on - strand at 73.041 kb on - strand at 73.041 kb on - strand at 73.110 kb on + strand at 73.233 kb on - strand at 73.247 kb on + strand, within GFF1450
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 70,572 + GFF1446 0.58 -0.1 70,572 + GFF1446 0.58 +0.3 70,572 + GFF1446 0.58 +0.3 70,572 + GFF1446 0.58 -0.2 70,573 - GFF1446 0.58 -0.5 70,668 + GFF1446 0.67 -0.5 70,668 + GFF1446 0.67 +0.9 70,669 - GFF1446 0.67 +1.1 70,669 - GFF1446 0.67 +0.7 70,669 - GFF1446 0.67 +0.8 70,669 - GFF1446 0.67 -0.0 70,819 + GFF1446 0.81 -0.3 70,820 - GFF1446 0.81 -0.0 70,820 - GFF1446 0.81 -0.2 70,820 - GFF1446 0.81 -0.4 71,007 + +0.1 71,007 + -0.4 71,008 - -3.1 71,008 - +1.4 71,166 + GFF1447 0.24 -0.2 71,166 + GFF1447 0.24 -0.2 71,166 + GFF1447 0.24 +0.8 71,166 + GFF1447 0.24 -0.3 71,166 + GFF1447 0.24 -1.7 71,166 + GFF1447 0.24 +0.2 71,166 + GFF1447 0.24 -0.9 71,166 + GFF1447 0.24 +0.2 71,166 + GFF1447 0.24 +0.7 71,166 + GFF1447 0.24 -0.0 71,167 - GFF1447 0.25 -0.4 71,167 - GFF1447 0.25 -0.5 71,167 - GFF1447 0.25 -0.5 71,167 - GFF1447 0.25 -1.9 71,167 - GFF1447 0.25 -0.7 71,241 + GFF1447 0.43 +0.2 71,298 + GFF1447 0.58 +0.0 71,299 - GFF1447 0.58 +0.3 71,481 + -0.2 71,481 + -0.3 71,482 - -0.5 71,482 - -0.9 71,570 + -0.9 71,766 + GFF1448 0.21 -0.2 71,886 + GFF1448 0.34 -0.4 71,886 + GFF1448 0.34 -0.4 71,886 + GFF1448 0.34 -0.8 71,886 + GFF1448 0.34 +0.5 71,887 - GFF1448 0.35 +0.9 71,887 - GFF1448 0.35 +0.5 71,922 + GFF1448 0.38 +0.1 71,922 + GFF1448 0.38 -0.2 71,961 + GFF1448 0.43 -0.1 72,084 + GFF1448 0.56 +1.0 72,085 - GFF1448 0.56 +0.1 72,148 - GFF1448 0.63 -1.4 72,203 + GFF1448 0.69 -0.0 72,203 + GFF1448 0.69 +0.8 72,204 - GFF1448 0.69 +0.1 72,204 - GFF1448 0.69 +0.4 72,208 + GFF1448 0.70 -0.1 72,208 + GFF1448 0.70 -1.1 72,297 + GFF1448 0.79 -0.3 72,297 + GFF1448 0.79 -0.4 72,298 - GFF1448 0.79 -0.9 72,298 - GFF1448 0.79 -0.1 72,384 + GFF1448 0.89 -1.0 72,384 + GFF1448 0.89 -1.2 72,444 + +0.3 72,444 + +0.5 72,648 + GFF1449 0.28 -1.2 72,717 + GFF1449 0.50 -0.7 72,717 + GFF1449 0.50 -0.1 72,717 + GFF1449 0.50 -0.2 72,718 - GFF1449 0.50 +0.4 72,718 - GFF1449 0.50 +0.0 72,747 + GFF1449 0.59 -0.4 72,747 + GFF1449 0.59 +0.2 72,748 - GFF1449 0.59 -0.3 72,765 + GFF1449 0.65 -1.1 72,765 + GFF1449 0.65 +0.3 72,765 + GFF1449 0.65 -0.1 72,766 - GFF1449 0.65 +0.2 72,766 - GFF1449 0.65 -0.0 72,766 - GFF1449 0.65 -0.3 73,040 + -0.5 73,040 + +0.0 73,041 - -0.1 73,041 - -0.8 73,041 - -0.2 73,041 - -1.3 73,110 + -0.3 73,233 - +0.5 73,247 + GFF1450 0.10 -0.9
Or see this region's nucleotide sequence