Strain Fitness in Xanthobacter sp. DMC5 around GFF1390

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1388 and GFF1389 are separated by 9 nucleotidesGFF1389 and GFF1390 overlap by 1 nucleotidesGFF1390 and GFF1391 are separated by 93 nucleotides GFF1388 - Putative 1,2-phenylacetyl-CoA epoxidase, subunit D, at 8,328 to 8,852 GFF1388 GFF1389 - 1,2-phenylacetyl-CoA epoxidase, subunit C, at 8,862 to 9,638 GFF1389 GFF1390 - 1,2-phenylacetyl-CoA epoxidase, subunit B, at 9,638 to 9,922 GFF1390 GFF1391 - 1,2-phenylacetyl-CoA epoxidase, subunit A, at 10,016 to 11,014 GFF1391 Position (kb) 9 10Strain fitness (log2 ratio) -1 0 1at 8.695 kb on + strand, within GFF1388at 8.696 kb on - strand, within GFF1388at 8.696 kb on - strand, within GFF1388at 8.917 kb on + strandat 8.918 kb on - strandat 8.965 kb on + strand, within GFF1389at 8.965 kb on + strand, within GFF1389at 8.966 kb on - strand, within GFF1389at 8.966 kb on - strand, within GFF1389at 8.966 kb on - strand, within GFF1389at 8.966 kb on - strand, within GFF1389at 8.966 kb on - strand, within GFF1389at 9.115 kb on + strand, within GFF1389at 9.115 kb on + strand, within GFF1389at 9.115 kb on + strand, within GFF1389at 9.115 kb on + strand, within GFF1389at 9.115 kb on + strand, within GFF1389at 9.116 kb on - strand, within GFF1389at 9.116 kb on - strand, within GFF1389at 9.116 kb on - strand, within GFF1389at 9.116 kb on - strand, within GFF1389at 9.116 kb on - strand, within GFF1389at 9.116 kb on - strand, within GFF1389at 9.116 kb on - strand, within GFF1389at 9.116 kb on - strand, within GFF1389at 9.214 kb on + strand, within GFF1389at 9.215 kb on - strand, within GFF1389at 9.509 kb on - strand, within GFF1389at 9.687 kb on + strand, within GFF1390at 9.688 kb on - strand, within GFF1390at 9.797 kb on - strand, within GFF1390at 9.797 kb on - strand, within GFF1390at 9.798 kb on + strand, within GFF1390at 9.799 kb on - strand, within GFF1390at 9.799 kb on - strand, within GFF1390at 9.799 kb on - strand, within GFF1390at 9.980 kb on + strandat 9.981 kb on - strandat 9.985 kb on + strandat 10.203 kb on + strand, within GFF1391at 10.204 kb on - strand, within GFF1391at 10.462 kb on - strand, within GFF1391at 10.476 kb on + strand, within GFF1391at 10.476 kb on + strand, within GFF1391at 10.477 kb on - strand, within GFF1391at 10.477 kb on - strand, within GFF1391at 10.533 kb on + strand, within GFF1391at 10.534 kb on - strand, within GFF1391at 10.534 kb on - strand, within GFF1391at 10.534 kb on - strand, within GFF1391at 10.542 kb on + strand, within GFF1391at 10.543 kb on - strand, within GFF1391at 10.543 kb on - strand, within GFF1391at 10.543 kb on - strand, within GFF1391at 10.635 kb on + strand, within GFF1391at 10.653 kb on + strand, within GFF1391at 10.726 kb on - strand, within GFF1391at 10.732 kb on - strand, within GFF1391at 10.732 kb on - strand, within GFF1391at 10.732 kb on - strand, within GFF1391at 10.732 kb on - strand, within GFF1391at 10.732 kb on - strand, within GFF1391

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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8,695 + GFF1388 0.70 -0.1
8,696 - GFF1388 0.70 -0.4
8,696 - GFF1388 0.70 -1.0
8,917 + -0.2
8,918 - +0.2
8,965 + GFF1389 0.13 -0.0
8,965 + GFF1389 0.13 -0.2
8,966 - GFF1389 0.13 -0.3
8,966 - GFF1389 0.13 +1.0
8,966 - GFF1389 0.13 +0.2
8,966 - GFF1389 0.13 +0.2
8,966 - GFF1389 0.13 +0.1
9,115 + GFF1389 0.33 -0.5
9,115 + GFF1389 0.33 -0.3
9,115 + GFF1389 0.33 -0.1
9,115 + GFF1389 0.33 +0.4
9,115 + GFF1389 0.33 +0.2
9,116 - GFF1389 0.33 +0.3
9,116 - GFF1389 0.33 +0.1
9,116 - GFF1389 0.33 -0.4
9,116 - GFF1389 0.33 +0.1
9,116 - GFF1389 0.33 +0.1
9,116 - GFF1389 0.33 -0.3
9,116 - GFF1389 0.33 +0.2
9,116 - GFF1389 0.33 +1.2
9,214 + GFF1389 0.45 +1.5
9,215 - GFF1389 0.45 +0.4
9,509 - GFF1389 0.83 +0.4
9,687 + GFF1390 0.17 +0.1
9,688 - GFF1390 0.18 +0.1
9,797 - GFF1390 0.56 -0.3
9,797 - GFF1390 0.56 +0.1
9,798 + GFF1390 0.56 +0.3
9,799 - GFF1390 0.56 -0.1
9,799 - GFF1390 0.56 -0.3
9,799 - GFF1390 0.56 +0.1
9,980 + +0.2
9,981 - -0.6
9,985 + -0.4
10,203 + GFF1391 0.19 -1.1
10,204 - GFF1391 0.19 +0.8
10,462 - GFF1391 0.45 -0.5
10,476 + GFF1391 0.46 +0.3
10,476 + GFF1391 0.46 -1.1
10,477 - GFF1391 0.46 -0.1
10,477 - GFF1391 0.46 +0.1
10,533 + GFF1391 0.52 +0.7
10,534 - GFF1391 0.52 -0.2
10,534 - GFF1391 0.52 +1.1
10,534 - GFF1391 0.52 -0.5
10,542 + GFF1391 0.53 +0.3
10,543 - GFF1391 0.53 -0.5
10,543 - GFF1391 0.53 -0.1
10,543 - GFF1391 0.53 -0.7
10,635 + GFF1391 0.62 -0.3
10,653 + GFF1391 0.64 +0.7
10,726 - GFF1391 0.71 -0.3
10,732 - GFF1391 0.72 +0.2
10,732 - GFF1391 0.72 +0.3
10,732 - GFF1391 0.72 +0.2
10,732 - GFF1391 0.72 -0.6
10,732 - GFF1391 0.72 +0.1

Or see this region's nucleotide sequence