Strain Fitness in Xanthobacter sp. DMC5 around GFF1104

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1103 and GFF1104 are separated by 69 nucleotidesGFF1104 and GFF1105 are separated by 137 nucleotides GFF1103 - hypothetical protein, at 1,183,302 to 1,184,588 GFF1103 GFF1104 - hypothetical protein, at 1,184,658 to 1,185,644 GFF1104 GFF1105 - Bifunctional protein HldE, at 1,185,782 to 1,187,245 GFF1105 Position (kb) 1184 1185 1186Strain fitness (log2 ratio) -1 0 1at 1185.696 kb on + strandat 1185.769 kb on - strandat 1185.769 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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1,185,696 + -0.3
1,185,769 - +0.3
1,185,769 - -0.2

Or see this region's nucleotide sequence