Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS39600 and QEN71_RS39605 are separated by 166 nucleotides QEN71_RS39605 and QEN71_RS39610 are separated by 108 nucleotides
QEN71_RS39600: QEN71_RS39600 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 2,272,783 to 2,274,039
_RS39600
QEN71_RS39605: QEN71_RS39605 - LysR substrate-binding domain-containing protein, at 2,274,206 to 2,275,123
_RS39605
QEN71_RS39610: QEN71_RS39610 - glycine betaine ABC transporter substrate-binding protein, at 2,275,232 to 2,276,236
_RS39610
Position (kb)
2274
2275
2276 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2273.267 kb on - strand, within QEN71_RS39600 at 2273.316 kb on + strand, within QEN71_RS39600 at 2273.318 kb on + strand, within QEN71_RS39600 at 2273.426 kb on + strand, within QEN71_RS39600 at 2273.517 kb on - strand, within QEN71_RS39600 at 2273.517 kb on - strand, within QEN71_RS39600 at 2273.593 kb on + strand, within QEN71_RS39600 at 2273.593 kb on + strand, within QEN71_RS39600 at 2273.593 kb on + strand, within QEN71_RS39600 at 2273.593 kb on + strand, within QEN71_RS39600 at 2273.594 kb on - strand, within QEN71_RS39600 at 2273.594 kb on - strand, within QEN71_RS39600 at 2273.594 kb on - strand, within QEN71_RS39600 at 2273.594 kb on - strand, within QEN71_RS39600 at 2273.594 kb on - strand, within QEN71_RS39600 at 2273.594 kb on - strand, within QEN71_RS39600 at 2273.700 kb on - strand, within QEN71_RS39600 at 2274.045 kb on - strand at 2274.134 kb on - strand at 2274.147 kb on + strand at 2274.151 kb on - strand at 2274.162 kb on + strand at 2274.294 kb on + strand at 2274.295 kb on - strand at 2274.295 kb on - strand at 2274.333 kb on - strand, within QEN71_RS39605 at 2274.436 kb on + strand, within QEN71_RS39605 at 2274.436 kb on + strand, within QEN71_RS39605 at 2274.436 kb on + strand, within QEN71_RS39605 at 2274.447 kb on + strand, within QEN71_RS39605 at 2274.576 kb on + strand, within QEN71_RS39605 at 2275.153 kb on - strand at 2275.153 kb on - strand at 2275.153 kb on - strand at 2275.233 kb on + strand at 2275.233 kb on + strand at 2275.234 kb on - strand at 2275.234 kb on - strand at 2275.404 kb on + strand, within QEN71_RS39610 at 2275.635 kb on + strand, within QEN71_RS39610 at 2275.636 kb on - strand, within QEN71_RS39610 at 2275.636 kb on - strand, within QEN71_RS39610 at 2275.723 kb on - strand, within QEN71_RS39610 at 2275.723 kb on - strand, within QEN71_RS39610 at 2275.770 kb on + strand, within QEN71_RS39610
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 2,273,267 - QEN71_RS39600 0.39 -0.1 2,273,316 + QEN71_RS39600 0.42 +1.2 2,273,318 + QEN71_RS39600 0.43 +1.9 2,273,426 + QEN71_RS39600 0.51 +1.0 2,273,517 - QEN71_RS39600 0.58 -0.2 2,273,517 - QEN71_RS39600 0.58 +1.7 2,273,593 + QEN71_RS39600 0.64 +0.2 2,273,593 + QEN71_RS39600 0.64 +1.4 2,273,593 + QEN71_RS39600 0.64 -2.0 2,273,593 + QEN71_RS39600 0.64 -0.2 2,273,594 - QEN71_RS39600 0.65 -0.6 2,273,594 - QEN71_RS39600 0.65 +0.3 2,273,594 - QEN71_RS39600 0.65 -0.1 2,273,594 - QEN71_RS39600 0.65 -0.1 2,273,594 - QEN71_RS39600 0.65 -0.7 2,273,594 - QEN71_RS39600 0.65 +0.3 2,273,700 - QEN71_RS39600 0.73 +0.6 2,274,045 - -0.6 2,274,134 - -0.3 2,274,147 + +0.2 2,274,151 - -1.5 2,274,162 + -0.5 2,274,294 + +0.9 2,274,295 - -1.4 2,274,295 - +0.2 2,274,333 - QEN71_RS39605 0.14 +0.5 2,274,436 + QEN71_RS39605 0.25 -0.0 2,274,436 + QEN71_RS39605 0.25 -0.7 2,274,436 + QEN71_RS39605 0.25 +0.3 2,274,447 + QEN71_RS39605 0.26 +0.4 2,274,576 + QEN71_RS39605 0.40 -0.8 2,275,153 - +0.1 2,275,153 - +0.2 2,275,153 - +0.8 2,275,233 + +0.5 2,275,233 + +0.2 2,275,234 - -0.7 2,275,234 - +0.0 2,275,404 + QEN71_RS39610 0.17 -0.8 2,275,635 + QEN71_RS39610 0.40 -1.3 2,275,636 - QEN71_RS39610 0.40 -0.4 2,275,636 - QEN71_RS39610 0.40 +0.0 2,275,723 - QEN71_RS39610 0.49 +0.4 2,275,723 - QEN71_RS39610 0.49 -0.3 2,275,770 + QEN71_RS39610 0.54 +0.3
Or see this region's nucleotide sequence