Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36660

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36655 and QEN71_RS36660 are separated by 141 nucleotidesQEN71_RS36660 and QEN71_RS36665 are separated by 64 nucleotides QEN71_RS36655: QEN71_RS36655 - cysteine synthase A, at 1,606,934 to 1,607,908 _RS36655 QEN71_RS36660: QEN71_RS36660 - DeoR/GlpR family DNA-binding transcription regulator, at 1,608,050 to 1,608,820 _RS36660 QEN71_RS36665: QEN71_RS36665 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 1,608,885 to 1,609,883 _RS36665 Position (kb) 1608 1609Strain fitness (log2 ratio) -2 -1 0 1 2at 1607.100 kb on + strand, within QEN71_RS36655at 1607.100 kb on + strand, within QEN71_RS36655at 1607.100 kb on + strand, within QEN71_RS36655at 1607.100 kb on + strand, within QEN71_RS36655at 1607.100 kb on + strand, within QEN71_RS36655at 1607.100 kb on + strand, within QEN71_RS36655at 1607.100 kb on + strand, within QEN71_RS36655at 1607.100 kb on + strand, within QEN71_RS36655at 1607.100 kb on + strand, within QEN71_RS36655at 1607.101 kb on - strand, within QEN71_RS36655at 1607.101 kb on - strand, within QEN71_RS36655at 1607.101 kb on - strand, within QEN71_RS36655at 1607.127 kb on + strand, within QEN71_RS36655at 1607.128 kb on - strand, within QEN71_RS36655at 1607.128 kb on - strand, within QEN71_RS36655at 1607.268 kb on + strand, within QEN71_RS36655at 1607.268 kb on + strand, within QEN71_RS36655at 1607.268 kb on + strand, within QEN71_RS36655at 1607.269 kb on - strand, within QEN71_RS36655at 1607.269 kb on - strand, within QEN71_RS36655at 1607.269 kb on - strand, within QEN71_RS36655at 1607.272 kb on + strand, within QEN71_RS36655at 1607.272 kb on + strand, within QEN71_RS36655at 1607.272 kb on + strand, within QEN71_RS36655at 1607.272 kb on + strand, within QEN71_RS36655at 1607.272 kb on + strand, within QEN71_RS36655at 1607.272 kb on + strand, within QEN71_RS36655at 1607.272 kb on + strand, within QEN71_RS36655at 1607.272 kb on + strand, within QEN71_RS36655at 1607.272 kb on + strand, within QEN71_RS36655at 1607.272 kb on + strand, within QEN71_RS36655at 1607.273 kb on - strand, within QEN71_RS36655at 1607.273 kb on - strand, within QEN71_RS36655at 1607.273 kb on - strand, within QEN71_RS36655at 1607.273 kb on - strand, within QEN71_RS36655at 1607.273 kb on - strand, within QEN71_RS36655at 1607.273 kb on - strand, within QEN71_RS36655at 1607.274 kb on + strand, within QEN71_RS36655at 1607.274 kb on + strand, within QEN71_RS36655at 1607.275 kb on - strand, within QEN71_RS36655at 1607.275 kb on - strand, within QEN71_RS36655at 1607.275 kb on - strand, within QEN71_RS36655at 1607.407 kb on + strand, within QEN71_RS36655at 1607.439 kb on + strand, within QEN71_RS36655at 1607.439 kb on + strand, within QEN71_RS36655at 1607.440 kb on - strand, within QEN71_RS36655at 1607.440 kb on - strand, within QEN71_RS36655at 1607.440 kb on - strand, within QEN71_RS36655at 1607.440 kb on - strand, within QEN71_RS36655at 1607.529 kb on + strand, within QEN71_RS36655at 1607.529 kb on + strand, within QEN71_RS36655at 1607.529 kb on + strand, within QEN71_RS36655at 1607.530 kb on - strand, within QEN71_RS36655at 1607.530 kb on - strand, within QEN71_RS36655at 1607.530 kb on - strand, within QEN71_RS36655at 1607.547 kb on + strand, within QEN71_RS36655at 1607.547 kb on + strand, within QEN71_RS36655at 1607.548 kb on - strand, within QEN71_RS36655at 1607.548 kb on - strand, within QEN71_RS36655at 1607.664 kb on - strand, within QEN71_RS36655at 1607.664 kb on - strand, within QEN71_RS36655at 1607.664 kb on - strand, within QEN71_RS36655at 1607.664 kb on - strand, within QEN71_RS36655at 1607.686 kb on + strand, within QEN71_RS36655at 1607.686 kb on + strand, within QEN71_RS36655at 1607.687 kb on - strand, within QEN71_RS36655at 1607.699 kb on - strand, within QEN71_RS36655at 1607.760 kb on + strand, within QEN71_RS36655at 1607.760 kb on + strand, within QEN71_RS36655at 1607.760 kb on + strand, within QEN71_RS36655at 1607.760 kb on + strand, within QEN71_RS36655at 1607.761 kb on - strand, within QEN71_RS36655at 1607.761 kb on - strand, within QEN71_RS36655at 1607.761 kb on - strand, within QEN71_RS36655at 1607.761 kb on - strand, within QEN71_RS36655at 1607.900 kb on + strandat 1607.900 kb on + strandat 1607.963 kb on + strandat 1607.963 kb on + strandat 1608.204 kb on - strand, within QEN71_RS36660at 1608.452 kb on - strand, within QEN71_RS36660at 1608.452 kb on - strand, within QEN71_RS36660at 1608.530 kb on + strand, within QEN71_RS36660at 1608.853 kb on + strandat 1608.853 kb on + strandat 1608.854 kb on - strandat 1608.865 kb on + strandat 1608.866 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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1,607,100 + QEN71_RS36655 0.17 +0.1
1,607,100 + QEN71_RS36655 0.17 -0.6
1,607,100 + QEN71_RS36655 0.17 -1.0
1,607,100 + QEN71_RS36655 0.17 -2.2
1,607,100 + QEN71_RS36655 0.17 +0.4
1,607,100 + QEN71_RS36655 0.17 +0.0
1,607,100 + QEN71_RS36655 0.17 -0.2
1,607,100 + QEN71_RS36655 0.17 +0.4
1,607,100 + QEN71_RS36655 0.17 -1.3
1,607,101 - QEN71_RS36655 0.17 +0.1
1,607,101 - QEN71_RS36655 0.17 +0.1
1,607,101 - QEN71_RS36655 0.17 +1.6
1,607,127 + QEN71_RS36655 0.20 -0.2
1,607,128 - QEN71_RS36655 0.20 -1.4
1,607,128 - QEN71_RS36655 0.20 -1.4
1,607,268 + QEN71_RS36655 0.34 +0.3
1,607,268 + QEN71_RS36655 0.34 +0.1
1,607,268 + QEN71_RS36655 0.34 +0.0
1,607,269 - QEN71_RS36655 0.34 +0.4
1,607,269 - QEN71_RS36655 0.34 -0.4
1,607,269 - QEN71_RS36655 0.34 +0.1
1,607,272 + QEN71_RS36655 0.35 +0.7
1,607,272 + QEN71_RS36655 0.35 +1.1
1,607,272 + QEN71_RS36655 0.35 +0.3
1,607,272 + QEN71_RS36655 0.35 +0.7
1,607,272 + QEN71_RS36655 0.35 +0.7
1,607,272 + QEN71_RS36655 0.35 +0.6
1,607,272 + QEN71_RS36655 0.35 +0.7
1,607,272 + QEN71_RS36655 0.35 -0.2
1,607,272 + QEN71_RS36655 0.35 -1.4
1,607,272 + QEN71_RS36655 0.35 -1.1
1,607,273 - QEN71_RS36655 0.35 -0.9
1,607,273 - QEN71_RS36655 0.35 +1.2
1,607,273 - QEN71_RS36655 0.35 -1.3
1,607,273 - QEN71_RS36655 0.35 -0.6
1,607,273 - QEN71_RS36655 0.35 -0.6
1,607,273 - QEN71_RS36655 0.35 -1.4
1,607,274 + QEN71_RS36655 0.35 -0.1
1,607,274 + QEN71_RS36655 0.35 +0.1
1,607,275 - QEN71_RS36655 0.35 +1.2
1,607,275 - QEN71_RS36655 0.35 -0.4
1,607,275 - QEN71_RS36655 0.35 -1.7
1,607,407 + QEN71_RS36655 0.49 +1.5
1,607,439 + QEN71_RS36655 0.52 -1.0
1,607,439 + QEN71_RS36655 0.52 +1.2
1,607,440 - QEN71_RS36655 0.52 -1.2
1,607,440 - QEN71_RS36655 0.52 -1.2
1,607,440 - QEN71_RS36655 0.52 -0.3
1,607,440 - QEN71_RS36655 0.52 -0.4
1,607,529 + QEN71_RS36655 0.61 +0.2
1,607,529 + QEN71_RS36655 0.61 +0.3
1,607,529 + QEN71_RS36655 0.61 -2.0
1,607,530 - QEN71_RS36655 0.61 -0.6
1,607,530 - QEN71_RS36655 0.61 -0.7
1,607,530 - QEN71_RS36655 0.61 -0.3
1,607,547 + QEN71_RS36655 0.63 -0.1
1,607,547 + QEN71_RS36655 0.63 -0.6
1,607,548 - QEN71_RS36655 0.63 -1.3
1,607,548 - QEN71_RS36655 0.63 +0.3
1,607,664 - QEN71_RS36655 0.75 +0.1
1,607,664 - QEN71_RS36655 0.75 -0.4
1,607,664 - QEN71_RS36655 0.75 +0.0
1,607,664 - QEN71_RS36655 0.75 -1.3
1,607,686 + QEN71_RS36655 0.77 -0.4
1,607,686 + QEN71_RS36655 0.77 -1.0
1,607,687 - QEN71_RS36655 0.77 -1.0
1,607,699 - QEN71_RS36655 0.78 +0.1
1,607,760 + QEN71_RS36655 0.85 -0.1
1,607,760 + QEN71_RS36655 0.85 -0.1
1,607,760 + QEN71_RS36655 0.85 -0.1
1,607,760 + QEN71_RS36655 0.85 +0.3
1,607,761 - QEN71_RS36655 0.85 -1.2
1,607,761 - QEN71_RS36655 0.85 -0.4
1,607,761 - QEN71_RS36655 0.85 -0.5
1,607,761 - QEN71_RS36655 0.85 +0.1
1,607,900 + -1.6
1,607,900 + +0.0
1,607,963 + +0.8
1,607,963 + -0.0
1,608,204 - QEN71_RS36660 0.20 +1.0
1,608,452 - QEN71_RS36660 0.52 +1.8
1,608,452 - QEN71_RS36660 0.52 +0.9
1,608,530 + QEN71_RS36660 0.62 +0.1
1,608,853 + +0.1
1,608,853 + -0.2
1,608,854 - -0.1
1,608,865 + -0.3
1,608,866 - +0.1

Or see this region's nucleotide sequence