Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34310

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS34300 and QEN71_RS34305 are separated by 72 nucleotidesQEN71_RS34305 and QEN71_RS34310 are separated by 212 nucleotidesQEN71_RS34310 and QEN71_RS34315 are separated by 289 nucleotides QEN71_RS34300: QEN71_RS34300 - proline racemase family protein, at 1,011,520 to 1,012,551 _RS34300 QEN71_RS34305: QEN71_RS34305 - GntR family transcriptional regulator, at 1,012,624 to 1,013,331 _RS34305 QEN71_RS34310: QEN71_RS34310 - hypothetical protein, at 1,013,544 to 1,013,858 _RS34310 QEN71_RS34315: QEN71_RS34315 - serine hydroxymethyltransferase, at 1,014,148 to 1,015,398 _RS34315 Position (kb) 1013 1014Strain fitness (log2 ratio) -1 0 1at 1012.571 kb on + strandat 1012.572 kb on - strandat 1012.572 kb on - strandat 1012.678 kb on + strandat 1012.684 kb on + strandat 1012.684 kb on + strandat 1012.685 kb on - strandat 1012.888 kb on + strand, within QEN71_RS34305at 1012.889 kb on - strand, within QEN71_RS34305at 1012.889 kb on - strand, within QEN71_RS34305at 1012.889 kb on - strand, within QEN71_RS34305at 1012.991 kb on - strand, within QEN71_RS34305at 1013.096 kb on - strand, within QEN71_RS34305at 1013.099 kb on - strand, within QEN71_RS34305at 1013.099 kb on - strand, within QEN71_RS34305at 1013.290 kb on + strandat 1013.291 kb on - strandat 1013.329 kb on + strandat 1013.329 kb on + strandat 1013.330 kb on - strandat 1013.459 kb on + strandat 1013.460 kb on - strandat 1013.497 kb on + strandat 1013.498 kb on - strandat 1013.559 kb on + strandat 1013.562 kb on - strandat 1013.562 kb on - strandat 1013.796 kb on + strand, within QEN71_RS34310at 1013.796 kb on + strand, within QEN71_RS34310at 1013.981 kb on + strandat 1013.982 kb on - strandat 1013.982 kb on - strandat 1013.983 kb on + strandat 1013.983 kb on + strandat 1014.008 kb on + strandat 1014.125 kb on + strandat 1014.125 kb on + strandat 1014.125 kb on + strandat 1014.126 kb on - strandat 1014.126 kb on - strandat 1014.166 kb on - strandat 1014.174 kb on - strandat 1014.313 kb on + strand, within QEN71_RS34315at 1014.314 kb on - strand, within QEN71_RS34315at 1014.341 kb on - strand, within QEN71_RS34315at 1014.736 kb on + strand, within QEN71_RS34315at 1014.736 kb on + strand, within QEN71_RS34315at 1014.761 kb on - strand, within QEN71_RS34315at 1014.761 kb on - strand, within QEN71_RS34315

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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1,012,571 + +0.1
1,012,572 - +0.1
1,012,572 - -0.4
1,012,678 + +0.9
1,012,684 + -0.0
1,012,684 + +0.1
1,012,685 - -1.4
1,012,888 + QEN71_RS34305 0.37 +0.8
1,012,889 - QEN71_RS34305 0.37 -0.9
1,012,889 - QEN71_RS34305 0.37 +0.1
1,012,889 - QEN71_RS34305 0.37 -0.4
1,012,991 - QEN71_RS34305 0.52 -0.7
1,013,096 - QEN71_RS34305 0.67 -1.1
1,013,099 - QEN71_RS34305 0.67 -0.7
1,013,099 - QEN71_RS34305 0.67 +0.2
1,013,290 + -0.9
1,013,291 - -1.4
1,013,329 + -0.2
1,013,329 + +0.6
1,013,330 - -1.6
1,013,459 + +0.0
1,013,460 - +1.0
1,013,497 + -1.4
1,013,498 - +0.2
1,013,559 + -0.6
1,013,562 - +0.4
1,013,562 - +0.4
1,013,796 + QEN71_RS34310 0.80 +0.3
1,013,796 + QEN71_RS34310 0.80 +0.3
1,013,981 + +1.1
1,013,982 - +0.1
1,013,982 - +0.1
1,013,983 + +0.8
1,013,983 + -1.0
1,014,008 + -0.6
1,014,125 + -0.4
1,014,125 + +0.1
1,014,125 + +0.7
1,014,126 - -1.4
1,014,126 - -0.0
1,014,166 - +0.6
1,014,174 - -0.5
1,014,313 + QEN71_RS34315 0.13 -0.9
1,014,314 - QEN71_RS34315 0.13 +0.0
1,014,341 - QEN71_RS34315 0.15 +1.2
1,014,736 + QEN71_RS34315 0.47 -0.7
1,014,736 + QEN71_RS34315 0.47 -0.9
1,014,761 - QEN71_RS34315 0.49 +0.4
1,014,761 - QEN71_RS34315 0.49 -0.6

Or see this region's nucleotide sequence