Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS19090

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS19085 and QEN71_RS19090 are separated by 682 nucleotidesQEN71_RS19090 and QEN71_RS19095 are separated by 30 nucleotidesQEN71_RS19095 and QEN71_RS19100 overlap by 4 nucleotides QEN71_RS19085: QEN71_RS19085 - alpha/beta hydrolase, at 4,244,371 to 4,245,204 _RS19085 QEN71_RS19090: QEN71_RS19090 - IS66 family transposase, at 4,245,887 to 4,247,473 _RS19090 QEN71_RS19095: QEN71_RS19095 - IS66 family insertion sequence element accessory protein TnpB, at 4,247,504 to 4,247,848 _RS19095 QEN71_RS19100: QEN71_RS19100 - transposase, at 4,247,845 to 4,248,327 _RS19100 Position (kb) 4245 4246 4247 4248Strain fitness (log2 ratio) -2 -1 0 1 2at 4244.999 kb on + strand, within QEN71_RS19085at 4245.000 kb on - strand, within QEN71_RS19085at 4245.030 kb on + strand, within QEN71_RS19085at 4245.031 kb on - strand, within QEN71_RS19085at 4245.116 kb on + strand, within QEN71_RS19085at 4245.117 kb on - strand, within QEN71_RS19085at 4245.121 kb on + strandat 4245.121 kb on + strandat 4245.121 kb on + strandat 4245.122 kb on - strandat 4245.122 kb on - strandat 4245.122 kb on - strandat 4245.142 kb on + strandat 4245.142 kb on + strandat 4245.143 kb on - strandat 4245.182 kb on - strandat 4245.233 kb on - strandat 4245.271 kb on + strandat 4245.314 kb on + strandat 4245.314 kb on + strandat 4245.315 kb on - strandat 4245.356 kb on + strandat 4245.356 kb on + strandat 4245.356 kb on + strandat 4245.383 kb on + strandat 4245.398 kb on + strandat 4245.399 kb on - strandat 4245.399 kb on - strandat 4245.507 kb on + strandat 4245.507 kb on + strandat 4245.679 kb on + strandat 4248.353 kb on + strandat 4248.353 kb on + strandat 4248.353 kb on + strandat 4248.353 kb on + strandat 4248.353 kb on + strandat 4248.353 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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4,244,999 + QEN71_RS19085 0.75 -0.1
4,245,000 - QEN71_RS19085 0.75 -0.5
4,245,030 + QEN71_RS19085 0.79 +0.6
4,245,031 - QEN71_RS19085 0.79 -0.7
4,245,116 + QEN71_RS19085 0.89 +0.3
4,245,117 - QEN71_RS19085 0.89 +1.2
4,245,121 + +1.4
4,245,121 + +1.2
4,245,121 + -0.5
4,245,122 - +0.0
4,245,122 - -0.9
4,245,122 - +1.8
4,245,142 + +0.4
4,245,142 + +2.7
4,245,143 - -0.3
4,245,182 - -0.4
4,245,233 - -0.5
4,245,271 + -1.0
4,245,314 + -0.5
4,245,314 + -1.5
4,245,315 - -0.9
4,245,356 + +0.5
4,245,356 + +0.8
4,245,356 + +0.0
4,245,383 + -0.4
4,245,398 + +0.3
4,245,399 - +0.1
4,245,399 - -1.9
4,245,507 + +0.8
4,245,507 + -1.5
4,245,679 + -0.5
4,248,353 + -0.8
4,248,353 + -0.6
4,248,353 + -1.3
4,248,353 + -0.5
4,248,353 + +0.5
4,248,353 + +0.5

Or see this region's nucleotide sequence