Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS14700

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS14695 and QEN71_RS14700 are separated by 4 nucleotidesQEN71_RS14700 and QEN71_RS14705 are separated by 9 nucleotides QEN71_RS14695: QEN71_RS14695 - N(2)-acetyl-L-2,4-diaminobutanoate deacetylase DoeB, at 3,279,386 to 3,280,426 _RS14695 QEN71_RS14700: QEN71_RS14700 - ectoine hydrolase DoeA, at 3,280,431 to 3,281,639 _RS14700 QEN71_RS14705: QEN71_RS14705 - cyclodeaminase, at 3,281,649 to 3,282,650 _RS14705 Position (kb) 3280 3281 3282Strain fitness (log2 ratio) -1 0 1 2at 3279.604 kb on + strand, within QEN71_RS14695at 3279.605 kb on - strand, within QEN71_RS14695at 3279.605 kb on - strand, within QEN71_RS14695at 3279.605 kb on - strand, within QEN71_RS14695at 3279.608 kb on + strand, within QEN71_RS14695at 3279.608 kb on + strand, within QEN71_RS14695at 3279.609 kb on - strand, within QEN71_RS14695at 3279.609 kb on - strand, within QEN71_RS14695at 3279.640 kb on + strand, within QEN71_RS14695at 3279.810 kb on - strand, within QEN71_RS14695at 3280.011 kb on + strand, within QEN71_RS14695at 3280.012 kb on - strand, within QEN71_RS14695at 3280.012 kb on - strand, within QEN71_RS14695at 3280.032 kb on + strand, within QEN71_RS14695at 3280.033 kb on - strand, within QEN71_RS14695at 3280.044 kb on + strand, within QEN71_RS14695at 3280.045 kb on - strand, within QEN71_RS14695at 3280.153 kb on - strand, within QEN71_RS14695at 3280.227 kb on - strand, within QEN71_RS14695at 3280.227 kb on - strand, within QEN71_RS14695at 3280.724 kb on + strand, within QEN71_RS14700at 3280.817 kb on - strand, within QEN71_RS14700at 3280.817 kb on - strand, within QEN71_RS14700at 3281.011 kb on + strand, within QEN71_RS14700at 3281.055 kb on - strand, within QEN71_RS14700at 3281.066 kb on + strand, within QEN71_RS14700at 3281.110 kb on + strand, within QEN71_RS14700at 3281.111 kb on - strand, within QEN71_RS14700at 3281.111 kb on - strand, within QEN71_RS14700at 3281.209 kb on + strand, within QEN71_RS14700at 3281.210 kb on - strand, within QEN71_RS14700at 3281.210 kb on - strand, within QEN71_RS14700at 3281.230 kb on + strand, within QEN71_RS14700at 3281.230 kb on + strand, within QEN71_RS14700at 3281.230 kb on + strand, within QEN71_RS14700at 3281.231 kb on - strand, within QEN71_RS14700at 3281.231 kb on - strand, within QEN71_RS14700at 3281.299 kb on + strand, within QEN71_RS14700at 3281.299 kb on + strand, within QEN71_RS14700at 3281.332 kb on + strand, within QEN71_RS14700at 3281.332 kb on + strand, within QEN71_RS14700at 3281.332 kb on + strand, within QEN71_RS14700at 3281.333 kb on - strand, within QEN71_RS14700at 3281.333 kb on - strand, within QEN71_RS14700at 3281.333 kb on - strand, within QEN71_RS14700at 3281.462 kb on - strand, within QEN71_RS14700at 3281.480 kb on - strand, within QEN71_RS14700at 3281.630 kb on + strandat 3281.631 kb on - strandat 3281.631 kb on - strandat 3281.631 kb on - strandat 3281.910 kb on + strand, within QEN71_RS14705at 3282.470 kb on - strand, within QEN71_RS14705at 3282.470 kb on - strand, within QEN71_RS14705

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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3,279,604 + QEN71_RS14695 0.21 +0.5
3,279,605 - QEN71_RS14695 0.21 -0.3
3,279,605 - QEN71_RS14695 0.21 -0.8
3,279,605 - QEN71_RS14695 0.21 -0.9
3,279,608 + QEN71_RS14695 0.21 +0.1
3,279,608 + QEN71_RS14695 0.21 +1.2
3,279,609 - QEN71_RS14695 0.21 -1.5
3,279,609 - QEN71_RS14695 0.21 -0.1
3,279,640 + QEN71_RS14695 0.24 +0.6
3,279,810 - QEN71_RS14695 0.41 +0.3
3,280,011 + QEN71_RS14695 0.60 +1.5
3,280,012 - QEN71_RS14695 0.60 +0.1
3,280,012 - QEN71_RS14695 0.60 -0.2
3,280,032 + QEN71_RS14695 0.62 -0.7
3,280,033 - QEN71_RS14695 0.62 +0.1
3,280,044 + QEN71_RS14695 0.63 +0.2
3,280,045 - QEN71_RS14695 0.63 +0.6
3,280,153 - QEN71_RS14695 0.74 -0.4
3,280,227 - QEN71_RS14695 0.81 -0.9
3,280,227 - QEN71_RS14695 0.81 -0.8
3,280,724 + QEN71_RS14700 0.24 -0.4
3,280,817 - QEN71_RS14700 0.32 -0.9
3,280,817 - QEN71_RS14700 0.32 +0.3
3,281,011 + QEN71_RS14700 0.48 +2.0
3,281,055 - QEN71_RS14700 0.52 -0.9
3,281,066 + QEN71_RS14700 0.53 -0.6
3,281,110 + QEN71_RS14700 0.56 -0.9
3,281,111 - QEN71_RS14700 0.56 +1.0
3,281,111 - QEN71_RS14700 0.56 +0.4
3,281,209 + QEN71_RS14700 0.64 -0.4
3,281,210 - QEN71_RS14700 0.64 -1.4
3,281,210 - QEN71_RS14700 0.64 -0.4
3,281,230 + QEN71_RS14700 0.66 -0.6
3,281,230 + QEN71_RS14700 0.66 +0.7
3,281,230 + QEN71_RS14700 0.66 -0.6
3,281,231 - QEN71_RS14700 0.66 -0.7
3,281,231 - QEN71_RS14700 0.66 -0.9
3,281,299 + QEN71_RS14700 0.72 -1.0
3,281,299 + QEN71_RS14700 0.72 +0.0
3,281,332 + QEN71_RS14700 0.75 -0.6
3,281,332 + QEN71_RS14700 0.75 +0.1
3,281,332 + QEN71_RS14700 0.75 +1.1
3,281,333 - QEN71_RS14700 0.75 -1.3
3,281,333 - QEN71_RS14700 0.75 -0.7
3,281,333 - QEN71_RS14700 0.75 +1.5
3,281,462 - QEN71_RS14700 0.85 -0.1
3,281,480 - QEN71_RS14700 0.87 -0.4
3,281,630 + +0.0
3,281,631 - +2.3
3,281,631 - +1.6
3,281,631 - +0.4
3,281,910 + QEN71_RS14705 0.26 -1.7
3,282,470 - QEN71_RS14705 0.82 +0.2
3,282,470 - QEN71_RS14705 0.82 -0.1

Or see this region's nucleotide sequence