Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS14415

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS14405 and QEN71_RS14410 are separated by 40 nucleotidesQEN71_RS14410 and QEN71_RS14415 overlap by 4 nucleotidesQEN71_RS14415 and QEN71_RS14420 overlap by 4 nucleotidesQEN71_RS14420 and QEN71_RS14425 are separated by 23 nucleotides QEN71_RS14405: QEN71_RS14405 - methylamine dehydrogenase accessory protein MauD, at 3,212,658 to 3,213,284 _RS14405 QEN71_RS14410: QEN71_RS14410 - methylamine dehydrogenase light chain, at 3,213,325 to 3,213,870 _RS14410 QEN71_RS14415: QEN71_RS14415 - cytochrome c, at 3,213,867 to 3,214,364 _RS14415 QEN71_RS14420: QEN71_RS14420 - cytochrome c, at 3,214,361 to 3,214,924 _RS14420 QEN71_RS14425: QEN71_RS14425 - aldehyde dehydrogenase family protein, at 3,214,948 to 3,216,453 _RS14425 Position (kb) 3213 3214 3215Strain fitness (log2 ratio) -2 -1 0 1at 3213.069 kb on + strand, within QEN71_RS14405at 3213.099 kb on + strand, within QEN71_RS14405at 3213.120 kb on + strand, within QEN71_RS14405at 3213.466 kb on + strand, within QEN71_RS14410at 3213.550 kb on + strand, within QEN71_RS14410at 3213.550 kb on + strand, within QEN71_RS14410at 3213.560 kb on - strand, within QEN71_RS14410at 3213.685 kb on + strand, within QEN71_RS14410at 3213.686 kb on - strand, within QEN71_RS14410at 3213.769 kb on + strand, within QEN71_RS14410at 3213.769 kb on + strand, within QEN71_RS14410at 3213.770 kb on - strand, within QEN71_RS14410at 3213.770 kb on - strand, within QEN71_RS14410at 3213.770 kb on - strand, within QEN71_RS14410at 3213.826 kb on + strandat 3213.826 kb on + strandat 3213.827 kb on - strandat 3213.879 kb on + strandat 3213.879 kb on + strandat 3213.964 kb on - strand, within QEN71_RS14415at 3214.059 kb on + strand, within QEN71_RS14415at 3214.072 kb on - strand, within QEN71_RS14415at 3214.072 kb on - strand, within QEN71_RS14415at 3214.158 kb on + strand, within QEN71_RS14415at 3214.159 kb on - strand, within QEN71_RS14415at 3214.221 kb on + strand, within QEN71_RS14415at 3214.222 kb on - strand, within QEN71_RS14415at 3214.682 kb on + strand, within QEN71_RS14420at 3214.683 kb on - strand, within QEN71_RS14420at 3214.803 kb on - strand, within QEN71_RS14420at 3214.804 kb on + strand, within QEN71_RS14420at 3214.805 kb on - strand, within QEN71_RS14420at 3214.805 kb on - strand, within QEN71_RS14420at 3214.805 kb on - strand, within QEN71_RS14420at 3215.338 kb on + strand, within QEN71_RS14425at 3215.338 kb on + strand, within QEN71_RS14425

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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3,213,069 + QEN71_RS14405 0.66 -0.4
3,213,099 + QEN71_RS14405 0.70 +0.1
3,213,120 + QEN71_RS14405 0.74 -0.3
3,213,466 + QEN71_RS14410 0.26 -1.0
3,213,550 + QEN71_RS14410 0.41 -0.2
3,213,550 + QEN71_RS14410 0.41 -0.0
3,213,560 - QEN71_RS14410 0.43 +0.3
3,213,685 + QEN71_RS14410 0.66 -0.6
3,213,686 - QEN71_RS14410 0.66 -0.9
3,213,769 + QEN71_RS14410 0.81 -0.8
3,213,769 + QEN71_RS14410 0.81 +0.9
3,213,770 - QEN71_RS14410 0.82 +0.3
3,213,770 - QEN71_RS14410 0.82 -0.2
3,213,770 - QEN71_RS14410 0.82 -0.3
3,213,826 + -0.9
3,213,826 + -0.4
3,213,827 - -0.2
3,213,879 + +0.6
3,213,879 + -0.3
3,213,964 - QEN71_RS14415 0.19 +0.1
3,214,059 + QEN71_RS14415 0.39 -1.1
3,214,072 - QEN71_RS14415 0.41 -0.7
3,214,072 - QEN71_RS14415 0.41 -1.0
3,214,158 + QEN71_RS14415 0.58 +0.7
3,214,159 - QEN71_RS14415 0.59 -0.3
3,214,221 + QEN71_RS14415 0.71 -1.1
3,214,222 - QEN71_RS14415 0.71 -0.4
3,214,682 + QEN71_RS14420 0.57 -0.2
3,214,683 - QEN71_RS14420 0.57 +1.6
3,214,803 - QEN71_RS14420 0.78 +0.4
3,214,804 + QEN71_RS14420 0.79 +0.9
3,214,805 - QEN71_RS14420 0.79 -0.7
3,214,805 - QEN71_RS14420 0.79 +0.5
3,214,805 - QEN71_RS14420 0.79 -2.2
3,215,338 + QEN71_RS14425 0.26 -0.4
3,215,338 + QEN71_RS14425 0.26 +0.5

Or see this region's nucleotide sequence