Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS11770

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS11760 and QEN71_RS11765 are separated by 88 nucleotidesQEN71_RS11765 and QEN71_RS11770 are separated by 68 nucleotidesQEN71_RS11770 and QEN71_RS11775 are separated by 148 nucleotidesQEN71_RS11775 and QEN71_RS11780 are separated by 215 nucleotides QEN71_RS11760: QEN71_RS11760 - tautomerase family protein, at 2,619,918 to 2,620,310 _RS11760 QEN71_RS11765: QEN71_RS11765 - hexameric tyrosine-coordinated heme protein, at 2,620,399 to 2,620,635 _RS11765 QEN71_RS11770: QEN71_RS11770 - catalase family peroxidase, at 2,620,704 to 2,621,705 _RS11770 QEN71_RS11775: QEN71_RS11775 - MarR family transcriptional regulator, at 2,621,854 to 2,622,459 _RS11775 QEN71_RS11780: QEN71_RS11780 - ABC transporter substrate-binding protein, at 2,622,675 to 2,624,294 _RS11780 Position (kb) 2620 2621 2622Strain fitness (log2 ratio) -2 -1 0 1at 2619.789 kb on - strandat 2619.818 kb on - strandat 2620.058 kb on - strand, within QEN71_RS11760at 2620.133 kb on - strand, within QEN71_RS11760at 2620.493 kb on + strand, within QEN71_RS11765at 2620.493 kb on + strand, within QEN71_RS11765at 2620.493 kb on + strand, within QEN71_RS11765at 2620.495 kb on + strand, within QEN71_RS11765at 2620.496 kb on - strand, within QEN71_RS11765at 2620.496 kb on - strand, within QEN71_RS11765at 2620.496 kb on - strand, within QEN71_RS11765at 2620.496 kb on - strand, within QEN71_RS11765at 2620.496 kb on - strand, within QEN71_RS11765at 2620.705 kb on + strandat 2621.002 kb on + strand, within QEN71_RS11770at 2621.002 kb on + strand, within QEN71_RS11770at 2621.003 kb on - strand, within QEN71_RS11770at 2621.003 kb on - strand, within QEN71_RS11770at 2621.041 kb on + strand, within QEN71_RS11770at 2621.041 kb on + strand, within QEN71_RS11770at 2621.041 kb on + strand, within QEN71_RS11770at 2621.042 kb on - strand, within QEN71_RS11770at 2621.080 kb on + strand, within QEN71_RS11770at 2621.146 kb on + strand, within QEN71_RS11770at 2621.147 kb on - strand, within QEN71_RS11770at 2621.147 kb on - strand, within QEN71_RS11770at 2621.147 kb on - strand, within QEN71_RS11770at 2621.209 kb on + strand, within QEN71_RS11770at 2621.510 kb on + strand, within QEN71_RS11770at 2621.511 kb on - strand, within QEN71_RS11770at 2621.568 kb on + strand, within QEN71_RS11770at 2621.568 kb on + strand, within QEN71_RS11770at 2621.595 kb on + strand, within QEN71_RS11770at 2621.596 kb on - strand, within QEN71_RS11770at 2621.596 kb on - strand, within QEN71_RS11770at 2621.817 kb on + strandat 2621.817 kb on + strandat 2622.041 kb on - strand, within QEN71_RS11775at 2622.041 kb on - strand, within QEN71_RS11775at 2622.068 kb on + strand, within QEN71_RS11775at 2622.083 kb on - strand, within QEN71_RS11775at 2622.307 kb on + strand, within QEN71_RS11775at 2622.307 kb on + strand, within QEN71_RS11775at 2622.307 kb on + strand, within QEN71_RS11775at 2622.307 kb on + strand, within QEN71_RS11775at 2622.307 kb on + strand, within QEN71_RS11775at 2622.308 kb on - strand, within QEN71_RS11775at 2622.308 kb on - strand, within QEN71_RS11775at 2622.308 kb on - strand, within QEN71_RS11775at 2622.308 kb on - strand, within QEN71_RS11775at 2622.308 kb on - strand, within QEN71_RS11775at 2622.371 kb on - strand, within QEN71_RS11775at 2622.457 kb on + strandat 2622.458 kb on - strandat 2622.511 kb on + strandat 2622.511 kb on + strandat 2622.669 kb on + strandat 2622.670 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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2,619,789 - -0.8
2,619,818 - -0.1
2,620,058 - QEN71_RS11760 0.36 -1.8
2,620,133 - QEN71_RS11760 0.55 +0.3
2,620,493 + QEN71_RS11765 0.40 +1.6
2,620,493 + QEN71_RS11765 0.40 -0.1
2,620,493 + QEN71_RS11765 0.40 -0.4
2,620,495 + QEN71_RS11765 0.41 -0.4
2,620,496 - QEN71_RS11765 0.41 -0.4
2,620,496 - QEN71_RS11765 0.41 -0.6
2,620,496 - QEN71_RS11765 0.41 +0.1
2,620,496 - QEN71_RS11765 0.41 +0.1
2,620,496 - QEN71_RS11765 0.41 +0.1
2,620,705 + -0.1
2,621,002 + QEN71_RS11770 0.30 +0.1
2,621,002 + QEN71_RS11770 0.30 -2.0
2,621,003 - QEN71_RS11770 0.30 +0.2
2,621,003 - QEN71_RS11770 0.30 +0.3
2,621,041 + QEN71_RS11770 0.34 -0.1
2,621,041 + QEN71_RS11770 0.34 +0.3
2,621,041 + QEN71_RS11770 0.34 -0.1
2,621,042 - QEN71_RS11770 0.34 -1.2
2,621,080 + QEN71_RS11770 0.38 -0.8
2,621,146 + QEN71_RS11770 0.44 +0.4
2,621,147 - QEN71_RS11770 0.44 +0.9
2,621,147 - QEN71_RS11770 0.44 -0.5
2,621,147 - QEN71_RS11770 0.44 -0.7
2,621,209 + QEN71_RS11770 0.50 +0.7
2,621,510 + QEN71_RS11770 0.80 -1.1
2,621,511 - QEN71_RS11770 0.81 -1.2
2,621,568 + QEN71_RS11770 0.86 -0.5
2,621,568 + QEN71_RS11770 0.86 -0.7
2,621,595 + QEN71_RS11770 0.89 -0.8
2,621,596 - QEN71_RS11770 0.89 +1.2
2,621,596 - QEN71_RS11770 0.89 -0.4
2,621,817 + -0.5
2,621,817 + -0.3
2,622,041 - QEN71_RS11775 0.31 -0.6
2,622,041 - QEN71_RS11775 0.31 +0.8
2,622,068 + QEN71_RS11775 0.35 +0.5
2,622,083 - QEN71_RS11775 0.38 +1.5
2,622,307 + QEN71_RS11775 0.75 -0.2
2,622,307 + QEN71_RS11775 0.75 +1.4
2,622,307 + QEN71_RS11775 0.75 -1.3
2,622,307 + QEN71_RS11775 0.75 -0.1
2,622,307 + QEN71_RS11775 0.75 -0.8
2,622,308 - QEN71_RS11775 0.75 +0.8
2,622,308 - QEN71_RS11775 0.75 -0.5
2,622,308 - QEN71_RS11775 0.75 +0.2
2,622,308 - QEN71_RS11775 0.75 -0.6
2,622,308 - QEN71_RS11775 0.75 +0.2
2,622,371 - QEN71_RS11775 0.85 +0.2
2,622,457 + -0.6
2,622,458 - -1.9
2,622,511 + -0.1
2,622,511 + +0.1
2,622,669 + +0.5
2,622,670 - +1.0

Or see this region's nucleotide sequence