Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS10765

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS10760 and QEN71_RS10765 are separated by 449 nucleotidesQEN71_RS10765 and QEN71_RS10770 are separated by 101 nucleotidesQEN71_RS10770 and QEN71_RS10775 are separated by 319 nucleotides QEN71_RS10760: QEN71_RS10760 - RNA polymerase factor sigma-54, at 2,389,497 to 2,390,969 _RS10760 QEN71_RS10765: QEN71_RS10765 - BON domain-containing protein, at 2,391,419 to 2,391,757 _RS10765 QEN71_RS10770: QEN71_RS10770 - PA2169 family four-helix-bundle protein, at 2,391,859 to 2,392,311 _RS10770 QEN71_RS10775: QEN71_RS10775 - hypothetical protein, at 2,392,631 to 2,392,915 _RS10775 Position (kb) 2391 2392Strain fitness (log2 ratio) -1 0 1at 2390.470 kb on + strand, within QEN71_RS10760at 2390.647 kb on + strand, within QEN71_RS10760at 2390.647 kb on + strand, within QEN71_RS10760at 2390.647 kb on + strand, within QEN71_RS10760at 2390.648 kb on - strand, within QEN71_RS10760at 2390.663 kb on - strand, within QEN71_RS10760at 2390.724 kb on + strand, within QEN71_RS10760at 2390.725 kb on - strand, within QEN71_RS10760at 2390.789 kb on + strand, within QEN71_RS10760at 2390.824 kb on + strandat 2390.824 kb on + strandat 2390.824 kb on + strandat 2390.841 kb on - strandat 2390.841 kb on - strandat 2390.841 kb on - strandat 2390.841 kb on - strandat 2390.960 kb on + strandat 2390.961 kb on - strandat 2390.969 kb on + strandat 2390.969 kb on + strandat 2390.970 kb on - strandat 2390.970 kb on - strandat 2391.010 kb on - strandat 2391.013 kb on + strandat 2391.013 kb on + strandat 2391.013 kb on + strandat 2391.014 kb on - strandat 2391.109 kb on - strandat 2391.214 kb on + strandat 2391.215 kb on - strandat 2391.215 kb on - strandat 2391.878 kb on + strandat 2391.929 kb on + strand, within QEN71_RS10770at 2391.929 kb on + strand, within QEN71_RS10770at 2391.929 kb on + strand, within QEN71_RS10770at 2391.929 kb on + strand, within QEN71_RS10770at 2391.930 kb on - strand, within QEN71_RS10770at 2392.311 kb on + strandat 2392.311 kb on + strandat 2392.311 kb on + strandat 2392.311 kb on + strandat 2392.312 kb on - strandat 2392.312 kb on - strandat 2392.312 kb on - strandat 2392.384 kb on + strandat 2392.384 kb on + strandat 2392.433 kb on + strandat 2392.433 kb on + strandat 2392.433 kb on + strandat 2392.470 kb on + strandat 2392.471 kb on - strandat 2392.473 kb on - strandat 2392.473 kb on - strandat 2392.473 kb on - strandat 2392.485 kb on + strandat 2392.485 kb on + strandat 2392.596 kb on + strandat 2392.596 kb on + strandat 2392.597 kb on - strandat 2392.698 kb on + strand, within QEN71_RS10775at 2392.699 kb on - strand, within QEN71_RS10775

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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2,390,470 + QEN71_RS10760 0.66 -1.5
2,390,647 + QEN71_RS10760 0.78 -0.9
2,390,647 + QEN71_RS10760 0.78 -0.5
2,390,647 + QEN71_RS10760 0.78 +0.2
2,390,648 - QEN71_RS10760 0.78 -1.5
2,390,663 - QEN71_RS10760 0.79 -0.1
2,390,724 + QEN71_RS10760 0.83 -0.3
2,390,725 - QEN71_RS10760 0.83 +0.4
2,390,789 + QEN71_RS10760 0.88 -0.0
2,390,824 + +1.2
2,390,824 + -1.2
2,390,824 + -0.3
2,390,841 - -0.8
2,390,841 - -0.7
2,390,841 - +0.5
2,390,841 - +0.1
2,390,960 + -1.1
2,390,961 - +0.2
2,390,969 + +0.8
2,390,969 + -0.5
2,390,970 - +0.1
2,390,970 - +0.0
2,391,010 - -0.5
2,391,013 + -0.1
2,391,013 + -0.4
2,391,013 + -1.3
2,391,014 - -1.3
2,391,109 - -0.2
2,391,214 + +0.5
2,391,215 - -0.5
2,391,215 - -0.0
2,391,878 + +0.5
2,391,929 + QEN71_RS10770 0.15 +0.3
2,391,929 + QEN71_RS10770 0.15 +0.5
2,391,929 + QEN71_RS10770 0.15 +0.1
2,391,929 + QEN71_RS10770 0.15 -0.8
2,391,930 - QEN71_RS10770 0.16 -1.3
2,392,311 + +1.4
2,392,311 + -0.2
2,392,311 + +0.2
2,392,311 + -0.1
2,392,312 - -1.0
2,392,312 - +0.2
2,392,312 - -0.1
2,392,384 + -0.7
2,392,384 + -0.4
2,392,433 + +0.2
2,392,433 + +0.8
2,392,433 + +0.8
2,392,470 + +0.3
2,392,471 - -0.0
2,392,473 - -0.1
2,392,473 - -0.1
2,392,473 - -1.0
2,392,485 + +0.3
2,392,485 + -1.6
2,392,596 + -1.3
2,392,596 + -0.4
2,392,597 - -0.4
2,392,698 + QEN71_RS10775 0.24 -0.7
2,392,699 - QEN71_RS10775 0.24 -0.8

Or see this region's nucleotide sequence