Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS07430

Experiment: LB_noSalt with Chloride 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS07420 and QEN71_RS07425 are separated by 237 nucleotidesQEN71_RS07425 and QEN71_RS07430 are separated by 310 nucleotidesQEN71_RS07430 and QEN71_RS07435 are separated by 92 nucleotides QEN71_RS07420: QEN71_RS07420 - mechanosensitive ion channel family protein, at 1,650,129 to 1,650,986 _RS07420 QEN71_RS07425: QEN71_RS07425 - hypothetical protein, at 1,651,224 to 1,651,436 _RS07425 QEN71_RS07430: QEN71_RS07430 - hypothetical protein, at 1,651,747 to 1,652,010 _RS07430 QEN71_RS07435: QEN71_RS07435 - cardiolipin synthase, at 1,652,103 to 1,653,365 _RS07435 Position (kb) 1651 1652 1653Strain fitness (log2 ratio) -1 0 1at 1650.773 kb on + strand, within QEN71_RS07420at 1650.774 kb on - strand, within QEN71_RS07420at 1650.774 kb on - strand, within QEN71_RS07420at 1650.774 kb on - strand, within QEN71_RS07420at 1650.774 kb on - strand, within QEN71_RS07420at 1650.774 kb on - strand, within QEN71_RS07420at 1650.774 kb on - strand, within QEN71_RS07420at 1650.774 kb on - strand, within QEN71_RS07420at 1650.774 kb on - strand, within QEN71_RS07420at 1650.804 kb on + strand, within QEN71_RS07420at 1650.804 kb on + strand, within QEN71_RS07420at 1650.805 kb on - strand, within QEN71_RS07420at 1650.805 kb on - strand, within QEN71_RS07420at 1650.805 kb on - strand, within QEN71_RS07420at 1651.170 kb on + strandat 1651.170 kb on + strandat 1651.170 kb on + strandat 1651.171 kb on - strandat 1651.171 kb on - strandat 1651.171 kb on - strandat 1651.174 kb on + strandat 1651.175 kb on - strandat 1651.186 kb on + strandat 1651.186 kb on + strandat 1651.186 kb on + strandat 1651.187 kb on - strandat 1651.187 kb on - strandat 1651.187 kb on - strandat 1651.187 kb on - strandat 1651.187 kb on - strandat 1651.194 kb on + strandat 1651.194 kb on + strandat 1651.199 kb on + strandat 1651.199 kb on + strandat 1651.199 kb on + strandat 1651.199 kb on + strandat 1651.200 kb on - strandat 1651.207 kb on + strandat 1651.207 kb on + strandat 1651.299 kb on + strand, within QEN71_RS07425at 1651.299 kb on + strand, within QEN71_RS07425at 1651.299 kb on + strand, within QEN71_RS07425at 1651.300 kb on - strand, within QEN71_RS07425at 1651.300 kb on - strand, within QEN71_RS07425at 1651.300 kb on - strand, within QEN71_RS07425at 1651.300 kb on - strand, within QEN71_RS07425at 1651.377 kb on + strand, within QEN71_RS07425at 1651.377 kb on + strand, within QEN71_RS07425at 1651.377 kb on + strand, within QEN71_RS07425at 1651.377 kb on + strand, within QEN71_RS07425at 1651.504 kb on + strandat 1651.561 kb on - strandat 1651.561 kb on - strandat 1651.605 kb on + strandat 1651.605 kb on + strandat 1651.606 kb on - strandat 1651.606 kb on - strandat 1651.606 kb on - strandat 1651.606 kb on - strandat 1651.636 kb on - strandat 1651.758 kb on + strandat 1651.766 kb on - strandat 1651.876 kb on + strand, within QEN71_RS07430at 1651.876 kb on + strand, within QEN71_RS07430at 1651.972 kb on + strand, within QEN71_RS07430at 1651.972 kb on + strand, within QEN71_RS07430at 1651.972 kb on + strand, within QEN71_RS07430at 1651.973 kb on - strand, within QEN71_RS07430at 1651.973 kb on - strand, within QEN71_RS07430at 1651.973 kb on - strand, within QEN71_RS07430at 1651.973 kb on - strand, within QEN71_RS07430at 1651.973 kb on - strand, within QEN71_RS07430at 1652.042 kb on + strandat 1652.042 kb on + strandat 1652.042 kb on + strandat 1652.043 kb on - strandat 1652.043 kb on - strandat 1652.208 kb on + strandat 1652.208 kb on + strandat 1652.209 kb on - strandat 1652.209 kb on - strandat 1652.349 kb on - strand, within QEN71_RS07435at 1652.349 kb on - strand, within QEN71_RS07435at 1652.357 kb on + strand, within QEN71_RS07435at 1652.357 kb on + strand, within QEN71_RS07435at 1652.357 kb on + strand, within QEN71_RS07435at 1652.357 kb on + strand, within QEN71_RS07435at 1652.357 kb on + strand, within QEN71_RS07435at 1652.358 kb on - strand, within QEN71_RS07435at 1652.358 kb on - strand, within QEN71_RS07435at 1652.358 kb on - strand, within QEN71_RS07435at 1652.376 kb on + strand, within QEN71_RS07435at 1652.376 kb on + strand, within QEN71_RS07435at 1652.376 kb on + strand, within QEN71_RS07435at 1652.377 kb on - strand, within QEN71_RS07435at 1652.494 kb on - strand, within QEN71_RS07435at 1652.536 kb on - strand, within QEN71_RS07435at 1652.536 kb on - strand, within QEN71_RS07435at 1652.622 kb on - strand, within QEN71_RS07435at 1652.723 kb on + strand, within QEN71_RS07435at 1652.723 kb on + strand, within QEN71_RS07435at 1652.724 kb on - strand, within QEN71_RS07435at 1652.724 kb on - strand, within QEN71_RS07435at 1652.770 kb on + strand, within QEN71_RS07435at 1652.770 kb on + strand, within QEN71_RS07435at 1652.770 kb on + strand, within QEN71_RS07435at 1652.770 kb on + strand, within QEN71_RS07435at 1652.770 kb on + strand, within QEN71_RS07435at 1652.770 kb on + strand, within QEN71_RS07435at 1652.770 kb on + strand, within QEN71_RS07435at 1652.770 kb on + strand, within QEN71_RS07435at 1652.770 kb on + strand, within QEN71_RS07435at 1652.770 kb on + strand, within QEN71_RS07435at 1652.770 kb on + strand, within QEN71_RS07435at 1652.770 kb on + strand, within QEN71_RS07435at 1652.770 kb on + strand, within QEN71_RS07435at 1652.770 kb on + strand, within QEN71_RS07435at 1652.770 kb on + strand, within QEN71_RS07435at 1652.770 kb on + strand, within QEN71_RS07435at 1652.770 kb on + strand, within QEN71_RS07435at 1652.770 kb on + strand, within QEN71_RS07435at 1652.771 kb on - strand, within QEN71_RS07435at 1652.771 kb on - strand, within QEN71_RS07435at 1652.771 kb on - strand, within QEN71_RS07435at 1652.771 kb on - strand, within QEN71_RS07435at 1652.771 kb on - strand, within QEN71_RS07435at 1652.771 kb on - strand, within QEN71_RS07435at 1652.771 kb on - strand, within QEN71_RS07435at 1652.771 kb on - strand, within QEN71_RS07435at 1652.771 kb on - strand, within QEN71_RS07435at 1652.771 kb on - strand, within QEN71_RS07435at 1652.771 kb on - strand, within QEN71_RS07435at 1652.788 kb on - strand, within QEN71_RS07435at 1652.877 kb on + strand, within QEN71_RS07435at 1652.877 kb on + strand, within QEN71_RS07435at 1652.877 kb on + strand, within QEN71_RS07435at 1652.877 kb on + strand, within QEN71_RS07435at 1652.877 kb on + strand, within QEN71_RS07435at 1652.877 kb on + strand, within QEN71_RS07435at 1652.878 kb on - strand, within QEN71_RS07435at 1652.878 kb on - strand, within QEN71_RS07435at 1652.878 kb on - strand, within QEN71_RS07435at 1652.878 kb on - strand, within QEN71_RS07435at 1652.878 kb on - strand, within QEN71_RS07435at 1652.878 kb on - strand, within QEN71_RS07435at 1652.928 kb on + strand, within QEN71_RS07435at 1652.928 kb on + strand, within QEN71_RS07435at 1652.929 kb on - strand, within QEN71_RS07435at 1652.929 kb on - strand, within QEN71_RS07435at 1652.929 kb on - strand, within QEN71_RS07435at 1652.998 kb on + strand, within QEN71_RS07435at 1652.998 kb on + strand, within QEN71_RS07435at 1652.998 kb on + strand, within QEN71_RS07435at 1652.998 kb on + strand, within QEN71_RS07435at 1652.998 kb on + strand, within QEN71_RS07435at 1652.998 kb on + strand, within QEN71_RS07435at 1652.998 kb on + strand, within QEN71_RS07435at 1652.999 kb on - strand, within QEN71_RS07435at 1652.999 kb on - strand, within QEN71_RS07435at 1652.999 kb on - strand, within QEN71_RS07435

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
remove
1,650,773 + QEN71_RS07420 0.75 -0.7
1,650,774 - QEN71_RS07420 0.75 -0.7
1,650,774 - QEN71_RS07420 0.75 +0.7
1,650,774 - QEN71_RS07420 0.75 -0.5
1,650,774 - QEN71_RS07420 0.75 -0.5
1,650,774 - QEN71_RS07420 0.75 +0.0
1,650,774 - QEN71_RS07420 0.75 +0.7
1,650,774 - QEN71_RS07420 0.75 -0.3
1,650,774 - QEN71_RS07420 0.75 -1.2
1,650,804 + QEN71_RS07420 0.79 -0.4
1,650,804 + QEN71_RS07420 0.79 -0.2
1,650,805 - QEN71_RS07420 0.79 +0.4
1,650,805 - QEN71_RS07420 0.79 -0.9
1,650,805 - QEN71_RS07420 0.79 +0.2
1,651,170 + +0.1
1,651,170 + +1.5
1,651,170 + -1.4
1,651,171 - -0.8
1,651,171 - +1.2
1,651,171 - -0.3
1,651,174 + +0.4
1,651,175 - +0.5
1,651,186 + +0.4
1,651,186 + +0.3
1,651,186 + +1.4
1,651,187 - +0.3
1,651,187 - -0.1
1,651,187 - -0.0
1,651,187 - +0.0
1,651,187 - -0.3
1,651,194 + -1.4
1,651,194 + -1.3
1,651,199 + -0.3
1,651,199 + -1.6
1,651,199 + -0.1
1,651,199 + -0.6
1,651,200 - -0.6
1,651,207 + -1.4
1,651,207 + -1.2
1,651,299 + QEN71_RS07425 0.35 -0.2
1,651,299 + QEN71_RS07425 0.35 +0.3
1,651,299 + QEN71_RS07425 0.35 +0.9
1,651,300 - QEN71_RS07425 0.36 -0.8
1,651,300 - QEN71_RS07425 0.36 +0.9
1,651,300 - QEN71_RS07425 0.36 -0.5
1,651,300 - QEN71_RS07425 0.36 -0.9
1,651,377 + QEN71_RS07425 0.72 +0.8
1,651,377 + QEN71_RS07425 0.72 +1.1
1,651,377 + QEN71_RS07425 0.72 +0.2
1,651,377 + QEN71_RS07425 0.72 -0.7
1,651,504 + -1.4
1,651,561 - +0.9
1,651,561 - -0.6
1,651,605 + +0.1
1,651,605 + -1.7
1,651,606 - -0.5
1,651,606 - +0.1
1,651,606 - -1.3
1,651,606 - -0.1
1,651,636 - -0.2
1,651,758 + -0.6
1,651,766 - +0.0
1,651,876 + QEN71_RS07430 0.49 +1.1
1,651,876 + QEN71_RS07430 0.49 -0.7
1,651,972 + QEN71_RS07430 0.85 -0.3
1,651,972 + QEN71_RS07430 0.85 -0.8
1,651,972 + QEN71_RS07430 0.85 +0.3
1,651,973 - QEN71_RS07430 0.86 +0.3
1,651,973 - QEN71_RS07430 0.86 -0.5
1,651,973 - QEN71_RS07430 0.86 -0.5
1,651,973 - QEN71_RS07430 0.86 +0.5
1,651,973 - QEN71_RS07430 0.86 +1.1
1,652,042 + +1.7
1,652,042 + +0.1
1,652,042 + +0.4
1,652,043 - -0.1
1,652,043 - -0.9
1,652,208 + -1.3
1,652,208 + +0.2
1,652,209 - +0.4
1,652,209 - +0.1
1,652,349 - QEN71_RS07435 0.19 -0.8
1,652,349 - QEN71_RS07435 0.19 -0.5
1,652,357 + QEN71_RS07435 0.20 +0.0
1,652,357 + QEN71_RS07435 0.20 -0.6
1,652,357 + QEN71_RS07435 0.20 -1.1
1,652,357 + QEN71_RS07435 0.20 -0.7
1,652,357 + QEN71_RS07435 0.20 +0.3
1,652,358 - QEN71_RS07435 0.20 +0.5
1,652,358 - QEN71_RS07435 0.20 -0.2
1,652,358 - QEN71_RS07435 0.20 +0.9
1,652,376 + QEN71_RS07435 0.22 +0.4
1,652,376 + QEN71_RS07435 0.22 +0.3
1,652,376 + QEN71_RS07435 0.22 +0.3
1,652,377 - QEN71_RS07435 0.22 -1.2
1,652,494 - QEN71_RS07435 0.31 -0.9
1,652,536 - QEN71_RS07435 0.34 -0.8
1,652,536 - QEN71_RS07435 0.34 -0.6
1,652,622 - QEN71_RS07435 0.41 -0.7
1,652,723 + QEN71_RS07435 0.49 +0.2
1,652,723 + QEN71_RS07435 0.49 -1.0
1,652,724 - QEN71_RS07435 0.49 -1.5
1,652,724 - QEN71_RS07435 0.49 -0.2
1,652,770 + QEN71_RS07435 0.53 +1.4
1,652,770 + QEN71_RS07435 0.53 +1.1
1,652,770 + QEN71_RS07435 0.53 -0.7
1,652,770 + QEN71_RS07435 0.53 -0.5
1,652,770 + QEN71_RS07435 0.53 +0.7
1,652,770 + QEN71_RS07435 0.53 -0.7
1,652,770 + QEN71_RS07435 0.53 -0.6
1,652,770 + QEN71_RS07435 0.53 -0.8
1,652,770 + QEN71_RS07435 0.53 -0.2
1,652,770 + QEN71_RS07435 0.53 -1.0
1,652,770 + QEN71_RS07435 0.53 +0.2
1,652,770 + QEN71_RS07435 0.53 -0.1
1,652,770 + QEN71_RS07435 0.53 +0.8
1,652,770 + QEN71_RS07435 0.53 -0.1
1,652,770 + QEN71_RS07435 0.53 +0.4
1,652,770 + QEN71_RS07435 0.53 -0.8
1,652,770 + QEN71_RS07435 0.53 +0.7
1,652,770 + QEN71_RS07435 0.53 -1.7
1,652,771 - QEN71_RS07435 0.53 +0.5
1,652,771 - QEN71_RS07435 0.53 -0.1
1,652,771 - QEN71_RS07435 0.53 -1.2
1,652,771 - QEN71_RS07435 0.53 -0.1
1,652,771 - QEN71_RS07435 0.53 +1.4
1,652,771 - QEN71_RS07435 0.53 -0.1
1,652,771 - QEN71_RS07435 0.53 +0.7
1,652,771 - QEN71_RS07435 0.53 +0.1
1,652,771 - QEN71_RS07435 0.53 -0.7
1,652,771 - QEN71_RS07435 0.53 +1.2
1,652,771 - QEN71_RS07435 0.53 +0.5
1,652,788 - QEN71_RS07435 0.54 +0.5
1,652,877 + QEN71_RS07435 0.61 +0.8
1,652,877 + QEN71_RS07435 0.61 -0.0
1,652,877 + QEN71_RS07435 0.61 +0.0
1,652,877 + QEN71_RS07435 0.61 -0.5
1,652,877 + QEN71_RS07435 0.61 +0.3
1,652,877 + QEN71_RS07435 0.61 +0.3
1,652,878 - QEN71_RS07435 0.61 +0.0
1,652,878 - QEN71_RS07435 0.61 -0.7
1,652,878 - QEN71_RS07435 0.61 +1.3
1,652,878 - QEN71_RS07435 0.61 -0.1
1,652,878 - QEN71_RS07435 0.61 +1.1
1,652,878 - QEN71_RS07435 0.61 -1.4
1,652,928 + QEN71_RS07435 0.65 +0.2
1,652,928 + QEN71_RS07435 0.65 +0.1
1,652,929 - QEN71_RS07435 0.65 -0.9
1,652,929 - QEN71_RS07435 0.65 +0.1
1,652,929 - QEN71_RS07435 0.65 +1.0
1,652,998 + QEN71_RS07435 0.71 +0.5
1,652,998 + QEN71_RS07435 0.71 +0.4
1,652,998 + QEN71_RS07435 0.71 -0.6
1,652,998 + QEN71_RS07435 0.71 +0.3
1,652,998 + QEN71_RS07435 0.71 -0.1
1,652,998 + QEN71_RS07435 0.71 -0.7
1,652,998 + QEN71_RS07435 0.71 -1.1
1,652,999 - QEN71_RS07435 0.71 -0.4
1,652,999 - QEN71_RS07435 0.71 -1.1
1,652,999 - QEN71_RS07435 0.71 -0.1

Or see this region's nucleotide sequence