Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03970 and QEN71_RS03975 are separated by 146 nucleotides QEN71_RS03975 and QEN71_RS03980 overlap by 4 nucleotides
QEN71_RS03970: QEN71_RS03970 - tetratricopeptide repeat protein, at 878,694 to 880,541
_RS03970
QEN71_RS03975: QEN71_RS03975 - metalloregulator ArsR/SmtB family transcription factor, at 880,688 to 881,032
_RS03975
QEN71_RS03980: QEN71_RS03980 - cation diffusion facilitator family transporter, at 881,029 to 882,126
_RS03980
Position (kb) 880
881
882 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 879.711 kb on + strand, within QEN71_RS03970 at 880.205 kb on - strand, within QEN71_RS03970 at 880.222 kb on + strand, within QEN71_RS03970 at 880.222 kb on + strand, within QEN71_RS03970 at 880.223 kb on - strand, within QEN71_RS03970 at 880.223 kb on - strand, within QEN71_RS03970 at 880.515 kb on - strand at 880.630 kb on + strand at 880.631 kb on - strand at 880.635 kb on + strand at 880.636 kb on - strand at 880.636 kb on - strand at 880.651 kb on + strand at 880.652 kb on - strand at 880.655 kb on + strand at 880.655 kb on + strand at 880.656 kb on - strand at 880.925 kb on + strand, within QEN71_RS03975 at 880.926 kb on - strand, within QEN71_RS03975 at 880.926 kb on - strand, within QEN71_RS03975 at 880.926 kb on - strand, within QEN71_RS03975 at 880.926 kb on - strand, within QEN71_RS03975 at 880.926 kb on - strand, within QEN71_RS03975 at 881.035 kb on + strand at 881.035 kb on + strand at 881.035 kb on + strand at 881.035 kb on + strand at 881.035 kb on + strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.061 kb on + strand at 881.318 kb on - strand, within QEN71_RS03980 at 881.318 kb on - strand, within QEN71_RS03980 at 881.318 kb on - strand, within QEN71_RS03980 at 881.440 kb on + strand, within QEN71_RS03980 at 881.440 kb on + strand, within QEN71_RS03980 at 881.441 kb on - strand, within QEN71_RS03980 at 881.466 kb on + strand, within QEN71_RS03980 at 881.467 kb on - strand, within QEN71_RS03980 at 881.679 kb on + strand, within QEN71_RS03980 at 881.679 kb on + strand, within QEN71_RS03980 at 881.679 kb on + strand, within QEN71_RS03980 at 881.679 kb on + strand, within QEN71_RS03980 at 881.680 kb on - strand, within QEN71_RS03980 at 881.680 kb on - strand, within QEN71_RS03980 at 881.797 kb on + strand, within QEN71_RS03980 at 881.884 kb on + strand, within QEN71_RS03980
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 879,711 + QEN71_RS03970 0.55 -0.4 880,205 - QEN71_RS03970 0.82 +0.0 880,222 + QEN71_RS03970 0.83 -0.1 880,222 + QEN71_RS03970 0.83 -0.7 880,223 - QEN71_RS03970 0.83 +0.6 880,223 - QEN71_RS03970 0.83 -0.7 880,515 - -1.5 880,630 + -0.4 880,631 - +0.3 880,635 + -0.7 880,636 - -1.0 880,636 - -0.4 880,651 + +1.1 880,652 - -0.1 880,655 + +0.6 880,655 + +1.0 880,656 - +0.3 880,925 + QEN71_RS03975 0.69 -0.2 880,926 - QEN71_RS03975 0.69 -0.3 880,926 - QEN71_RS03975 0.69 -0.2 880,926 - QEN71_RS03975 0.69 -0.8 880,926 - QEN71_RS03975 0.69 -3.9 880,926 - QEN71_RS03975 0.69 -1.1 881,035 + +0.0 881,035 + +0.1 881,035 + +0.3 881,035 + -0.0 881,035 + -0.8 881,036 - -1.8 881,036 - +0.6 881,036 - -0.4 881,036 - -1.4 881,036 - +0.3 881,036 - -0.7 881,036 - -0.6 881,036 - +1.6 881,036 - -1.3 881,036 - -0.4 881,036 - -1.1 881,061 + -1.5 881,318 - QEN71_RS03980 0.26 -0.9 881,318 - QEN71_RS03980 0.26 -0.0 881,318 - QEN71_RS03980 0.26 -0.4 881,440 + QEN71_RS03980 0.37 +0.3 881,440 + QEN71_RS03980 0.37 +0.2 881,441 - QEN71_RS03980 0.38 +1.7 881,466 + QEN71_RS03980 0.40 -1.3 881,467 - QEN71_RS03980 0.40 -1.3 881,679 + QEN71_RS03980 0.59 -0.3 881,679 + QEN71_RS03980 0.59 -0.1 881,679 + QEN71_RS03980 0.59 -0.1 881,679 + QEN71_RS03980 0.59 -0.5 881,680 - QEN71_RS03980 0.59 -2.4 881,680 - QEN71_RS03980 0.59 -0.4 881,797 + QEN71_RS03980 0.70 -0.4 881,884 + QEN71_RS03980 0.78 +1.3
Or see this region's nucleotide sequence