Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS01280

Experiment: LB_noSalt with Chloride 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS01270 and QEN71_RS01275 are separated by 18 nucleotidesQEN71_RS01275 and QEN71_RS01280 are separated by 18 nucleotidesQEN71_RS01280 and QEN71_RS01285 are separated by 30 nucleotides QEN71_RS01270: QEN71_RS01270 - ATP-binding cassette domain-containing protein, at 287,570 to 288,460 _RS01270 QEN71_RS01275: QEN71_RS01275 - MlaD family protein, at 288,479 to 289,441 _RS01275 QEN71_RS01280: QEN71_RS01280 - ABC-type transport auxiliary lipoprotein family protein, at 289,460 to 290,086 _RS01280 QEN71_RS01285: QEN71_RS01285 - VanZ family protein, at 290,117 to 291,277 _RS01285 Position (kb) 289 290 291Strain fitness (log2 ratio) -2 -1 0 1 2at 288.487 kb on + strandat 288.487 kb on + strandat 288.487 kb on + strandat 288.488 kb on - strandat 288.488 kb on - strandat 288.585 kb on + strand, within QEN71_RS01275at 288.585 kb on + strand, within QEN71_RS01275at 288.586 kb on - strand, within QEN71_RS01275at 288.586 kb on - strand, within QEN71_RS01275at 288.586 kb on - strand, within QEN71_RS01275at 288.586 kb on - strand, within QEN71_RS01275at 288.586 kb on - strand, within QEN71_RS01275at 288.642 kb on + strand, within QEN71_RS01275at 288.643 kb on - strand, within QEN71_RS01275at 288.643 kb on - strand, within QEN71_RS01275at 288.643 kb on - strand, within QEN71_RS01275at 288.643 kb on - strand, within QEN71_RS01275at 288.647 kb on + strand, within QEN71_RS01275at 288.829 kb on + strand, within QEN71_RS01275at 288.829 kb on + strand, within QEN71_RS01275at 288.829 kb on + strand, within QEN71_RS01275at 288.830 kb on - strand, within QEN71_RS01275at 288.830 kb on - strand, within QEN71_RS01275at 288.830 kb on - strand, within QEN71_RS01275at 289.259 kb on + strand, within QEN71_RS01275at 289.260 kb on - strand, within QEN71_RS01275at 289.445 kb on + strandat 289.445 kb on + strandat 289.445 kb on + strandat 289.445 kb on + strandat 289.446 kb on - strandat 289.453 kb on + strandat 289.453 kb on + strandat 289.453 kb on + strandat 289.453 kb on + strandat 289.454 kb on - strandat 289.454 kb on - strandat 289.454 kb on - strandat 289.454 kb on - strandat 289.454 kb on - strandat 289.454 kb on - strandat 289.454 kb on - strandat 289.454 kb on - strandat 289.577 kb on + strand, within QEN71_RS01280at 289.695 kb on - strand, within QEN71_RS01280at 290.177 kb on + strandat 290.177 kb on + strandat 290.178 kb on - strandat 290.178 kb on - strandat 290.178 kb on - strandat 290.178 kb on - strandat 290.178 kb on - strandat 290.178 kb on - strandat 290.178 kb on - strandat 290.195 kb on + strandat 290.196 kb on - strandat 290.196 kb on - strandat 290.196 kb on - strandat 290.196 kb on - strandat 290.207 kb on + strandat 290.216 kb on + strandat 290.216 kb on + strandat 290.217 kb on - strandat 290.217 kb on - strandat 290.217 kb on - strandat 290.252 kb on + strand, within QEN71_RS01285at 290.252 kb on + strand, within QEN71_RS01285at 290.252 kb on + strand, within QEN71_RS01285at 290.252 kb on + strand, within QEN71_RS01285at 290.252 kb on + strand, within QEN71_RS01285at 290.252 kb on + strand, within QEN71_RS01285at 290.253 kb on - strand, within QEN71_RS01285at 290.253 kb on - strand, within QEN71_RS01285at 290.253 kb on - strand, within QEN71_RS01285at 290.253 kb on - strand, within QEN71_RS01285at 290.253 kb on - strand, within QEN71_RS01285at 290.253 kb on - strand, within QEN71_RS01285at 290.276 kb on + strand, within QEN71_RS01285at 290.276 kb on + strand, within QEN71_RS01285at 290.276 kb on + strand, within QEN71_RS01285at 290.277 kb on - strand, within QEN71_RS01285at 290.277 kb on - strand, within QEN71_RS01285at 290.277 kb on - strand, within QEN71_RS01285at 290.315 kb on + strand, within QEN71_RS01285at 290.315 kb on + strand, within QEN71_RS01285at 290.315 kb on + strand, within QEN71_RS01285at 290.315 kb on + strand, within QEN71_RS01285at 290.315 kb on + strand, within QEN71_RS01285at 290.316 kb on - strand, within QEN71_RS01285at 290.316 kb on - strand, within QEN71_RS01285at 290.316 kb on - strand, within QEN71_RS01285at 290.316 kb on - strand, within QEN71_RS01285at 290.316 kb on - strand, within QEN71_RS01285at 290.438 kb on + strand, within QEN71_RS01285at 290.438 kb on + strand, within QEN71_RS01285at 290.438 kb on + strand, within QEN71_RS01285at 290.438 kb on + strand, within QEN71_RS01285at 290.439 kb on - strand, within QEN71_RS01285at 290.636 kb on + strand, within QEN71_RS01285at 290.636 kb on + strand, within QEN71_RS01285at 290.636 kb on + strand, within QEN71_RS01285at 290.636 kb on + strand, within QEN71_RS01285at 290.636 kb on + strand, within QEN71_RS01285at 290.636 kb on + strand, within QEN71_RS01285at 290.636 kb on + strand, within QEN71_RS01285at 290.636 kb on + strand, within QEN71_RS01285at 290.636 kb on + strand, within QEN71_RS01285at 290.636 kb on + strand, within QEN71_RS01285at 290.636 kb on + strand, within QEN71_RS01285at 290.636 kb on + strand, within QEN71_RS01285at 290.637 kb on - strand, within QEN71_RS01285at 290.637 kb on - strand, within QEN71_RS01285at 290.637 kb on - strand, within QEN71_RS01285at 290.637 kb on - strand, within QEN71_RS01285at 290.637 kb on - strand, within QEN71_RS01285at 290.637 kb on - strand, within QEN71_RS01285at 290.637 kb on - strand, within QEN71_RS01285at 290.637 kb on - strand, within QEN71_RS01285at 290.637 kb on - strand, within QEN71_RS01285at 290.637 kb on - strand, within QEN71_RS01285at 290.637 kb on - strand, within QEN71_RS01285at 290.637 kb on - strand, within QEN71_RS01285

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
remove
288,487 + +2.2
288,487 + +1.1
288,487 + +0.6
288,488 - -0.3
288,488 - +0.2
288,585 + QEN71_RS01275 0.11 +1.0
288,585 + QEN71_RS01275 0.11 -0.0
288,586 - QEN71_RS01275 0.11 +0.1
288,586 - QEN71_RS01275 0.11 -0.8
288,586 - QEN71_RS01275 0.11 +0.1
288,586 - QEN71_RS01275 0.11 -0.6
288,586 - QEN71_RS01275 0.11 +0.0
288,642 + QEN71_RS01275 0.17 +0.6
288,643 - QEN71_RS01275 0.17 +0.1
288,643 - QEN71_RS01275 0.17 +1.7
288,643 - QEN71_RS01275 0.17 -0.5
288,643 - QEN71_RS01275 0.17 +0.5
288,647 + QEN71_RS01275 0.17 +0.2
288,829 + QEN71_RS01275 0.36 +1.2
288,829 + QEN71_RS01275 0.36 -0.2
288,829 + QEN71_RS01275 0.36 +0.8
288,830 - QEN71_RS01275 0.36 +0.0
288,830 - QEN71_RS01275 0.36 +1.6
288,830 - QEN71_RS01275 0.36 -0.8
289,259 + QEN71_RS01275 0.81 -0.3
289,260 - QEN71_RS01275 0.81 +1.2
289,445 + -0.1
289,445 + +0.4
289,445 + +1.8
289,445 + -0.4
289,446 - +0.5
289,453 + -0.6
289,453 + +0.8
289,453 + +0.8
289,453 + -0.7
289,454 - -0.8
289,454 - +1.2
289,454 - -0.0
289,454 - +0.9
289,454 - +0.4
289,454 - +0.4
289,454 - -0.1
289,454 - +0.3
289,577 + QEN71_RS01280 0.19 +0.1
289,695 - QEN71_RS01280 0.37 -2.7
290,177 + +0.8
290,177 + +0.0
290,178 - +0.5
290,178 - +1.2
290,178 - +0.4
290,178 - -1.5
290,178 - +0.2
290,178 - +0.2
290,178 - +0.7
290,195 + -1.5
290,196 - +1.4
290,196 - -2.4
290,196 - -0.3
290,196 - +0.1
290,207 + +0.0
290,216 + +1.2
290,216 + +0.7
290,217 - -0.5
290,217 - +1.3
290,217 - +0.2
290,252 + QEN71_RS01285 0.12 +0.1
290,252 + QEN71_RS01285 0.12 -0.0
290,252 + QEN71_RS01285 0.12 -0.8
290,252 + QEN71_RS01285 0.12 -0.2
290,252 + QEN71_RS01285 0.12 -0.1
290,252 + QEN71_RS01285 0.12 +0.4
290,253 - QEN71_RS01285 0.12 -0.5
290,253 - QEN71_RS01285 0.12 +0.2
290,253 - QEN71_RS01285 0.12 +1.0
290,253 - QEN71_RS01285 0.12 +0.5
290,253 - QEN71_RS01285 0.12 -0.1
290,253 - QEN71_RS01285 0.12 -0.6
290,276 + QEN71_RS01285 0.14 +0.3
290,276 + QEN71_RS01285 0.14 +1.0
290,276 + QEN71_RS01285 0.14 +1.0
290,277 - QEN71_RS01285 0.14 +1.6
290,277 - QEN71_RS01285 0.14 -0.0
290,277 - QEN71_RS01285 0.14 -1.1
290,315 + QEN71_RS01285 0.17 +0.6
290,315 + QEN71_RS01285 0.17 +1.0
290,315 + QEN71_RS01285 0.17 +2.5
290,315 + QEN71_RS01285 0.17 -0.1
290,315 + QEN71_RS01285 0.17 -0.0
290,316 - QEN71_RS01285 0.17 -0.0
290,316 - QEN71_RS01285 0.17 -0.2
290,316 - QEN71_RS01285 0.17 +0.2
290,316 - QEN71_RS01285 0.17 -0.0
290,316 - QEN71_RS01285 0.17 -0.0
290,438 + QEN71_RS01285 0.28 -0.4
290,438 + QEN71_RS01285 0.28 -0.2
290,438 + QEN71_RS01285 0.28 +1.3
290,438 + QEN71_RS01285 0.28 +0.9
290,439 - QEN71_RS01285 0.28 +0.2
290,636 + QEN71_RS01285 0.45 +0.5
290,636 + QEN71_RS01285 0.45 +0.9
290,636 + QEN71_RS01285 0.45 +0.0
290,636 + QEN71_RS01285 0.45 -1.0
290,636 + QEN71_RS01285 0.45 -0.4
290,636 + QEN71_RS01285 0.45 -0.3
290,636 + QEN71_RS01285 0.45 +0.1
290,636 + QEN71_RS01285 0.45 -0.3
290,636 + QEN71_RS01285 0.45 +0.3
290,636 + QEN71_RS01285 0.45 +0.0
290,636 + QEN71_RS01285 0.45 +1.1
290,636 + QEN71_RS01285 0.45 -0.6
290,637 - QEN71_RS01285 0.45 +1.4
290,637 - QEN71_RS01285 0.45 +0.4
290,637 - QEN71_RS01285 0.45 +0.7
290,637 - QEN71_RS01285 0.45 +0.0
290,637 - QEN71_RS01285 0.45 -0.0
290,637 - QEN71_RS01285 0.45 -0.3
290,637 - QEN71_RS01285 0.45 -0.3
290,637 - QEN71_RS01285 0.45 -0.1
290,637 - QEN71_RS01285 0.45 -0.5
290,637 - QEN71_RS01285 0.45 +1.0
290,637 - QEN71_RS01285 0.45 +0.1
290,637 - QEN71_RS01285 0.45 -1.1

Or see this region's nucleotide sequence