Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS19150 and LRK53_RS19155 are separated by 242 nucleotides LRK53_RS19155 and LRK53_RS19160 are separated by 302 nucleotides
LRK53_RS19150: LRK53_RS19150 - hypothetical protein, at 212,463 to 213,278
_RS19150
LRK53_RS19155: LRK53_RS19155 - hypothetical protein, at 213,521 to 214,360
_RS19155
LRK53_RS19160: LRK53_RS19160 - recombination-associated protein RdgC, at 214,663 to 215,574
_RS19160
Position (kb) 213
214
215 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 212.574 kb on + strand, within LRK53_RS19150 at 212.574 kb on + strand, within LRK53_RS19150 at 212.574 kb on + strand, within LRK53_RS19150 at 212.574 kb on + strand, within LRK53_RS19150 at 212.575 kb on - strand, within LRK53_RS19150 at 212.817 kb on + strand, within LRK53_RS19150 at 212.817 kb on + strand, within LRK53_RS19150 at 212.817 kb on + strand, within LRK53_RS19150 at 212.817 kb on + strand, within LRK53_RS19150 at 212.817 kb on + strand, within LRK53_RS19150 at 212.818 kb on - strand, within LRK53_RS19150 at 212.818 kb on - strand, within LRK53_RS19150 at 212.818 kb on - strand, within LRK53_RS19150 at 212.818 kb on - strand, within LRK53_RS19150 at 212.928 kb on + strand, within LRK53_RS19150 at 212.929 kb on - strand, within LRK53_RS19150 at 212.929 kb on - strand, within LRK53_RS19150 at 213.135 kb on + strand, within LRK53_RS19150 at 213.136 kb on - strand, within LRK53_RS19150 at 213.136 kb on - strand, within LRK53_RS19150 at 213.158 kb on - strand, within LRK53_RS19150 at 213.168 kb on + strand, within LRK53_RS19150 at 213.168 kb on + strand, within LRK53_RS19150 at 213.334 kb on + strand at 213.334 kb on + strand at 213.334 kb on + strand at 213.334 kb on + strand at 213.335 kb on - strand at 213.335 kb on - strand at 213.335 kb on - strand at 213.335 kb on - strand at 213.335 kb on - strand at 213.335 kb on - strand at 213.335 kb on - strand at 213.335 kb on - strand at 213.335 kb on - strand at 213.335 kb on - strand at 213.335 kb on - strand at 213.335 kb on - strand at 213.335 kb on - strand at 213.483 kb on + strand at 213.484 kb on - strand at 213.518 kb on + strand at 213.518 kb on + strand at 213.518 kb on + strand at 213.518 kb on + strand at 213.518 kb on + strand at 213.518 kb on + strand at 213.518 kb on + strand at 213.518 kb on + strand at 213.518 kb on + strand at 213.518 kb on + strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.519 kb on - strand at 213.556 kb on - strand at 213.556 kb on - strand at 213.728 kb on + strand, within LRK53_RS19155 at 213.728 kb on + strand, within LRK53_RS19155 at 213.836 kb on + strand, within LRK53_RS19155 at 213.875 kb on - strand, within LRK53_RS19155 at 213.956 kb on - strand, within LRK53_RS19155 at 214.068 kb on - strand, within LRK53_RS19155 at 214.280 kb on + strand at 214.280 kb on + strand at 214.281 kb on - strand at 214.281 kb on - strand at 214.281 kb on - strand at 214.281 kb on - strand at 214.344 kb on - strand at 214.344 kb on - strand at 214.432 kb on + strand at 214.432 kb on + strand at 214.432 kb on + strand at 214.432 kb on + strand at 214.432 kb on + strand at 214.432 kb on + strand at 214.432 kb on + strand at 214.432 kb on + strand at 214.432 kb on + strand at 214.432 kb on + strand at 214.432 kb on + strand at 214.433 kb on - strand at 214.433 kb on - strand at 214.433 kb on - strand at 214.433 kb on - strand at 214.433 kb on - strand at 214.433 kb on - strand at 214.608 kb on + strand at 214.630 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 212,574 + LRK53_RS19150 0.14 -2.5 212,574 + LRK53_RS19150 0.14 -1.8 212,574 + LRK53_RS19150 0.14 -1.9 212,574 + LRK53_RS19150 0.14 -0.8 212,575 - LRK53_RS19150 0.14 -1.4 212,817 + LRK53_RS19150 0.43 -1.3 212,817 + LRK53_RS19150 0.43 +1.1 212,817 + LRK53_RS19150 0.43 -0.4 212,817 + LRK53_RS19150 0.43 -1.4 212,817 + LRK53_RS19150 0.43 -1.7 212,818 - LRK53_RS19150 0.44 -1.5 212,818 - LRK53_RS19150 0.44 -0.3 212,818 - LRK53_RS19150 0.44 -0.0 212,818 - LRK53_RS19150 0.44 -1.2 212,928 + LRK53_RS19150 0.57 -1.6 212,929 - LRK53_RS19150 0.57 -2.9 212,929 - LRK53_RS19150 0.57 +0.1 213,135 + LRK53_RS19150 0.82 +0.5 213,136 - LRK53_RS19150 0.82 -1.7 213,136 - LRK53_RS19150 0.82 -1.0 213,158 - LRK53_RS19150 0.85 +0.2 213,168 + LRK53_RS19150 0.86 +0.2 213,168 + LRK53_RS19150 0.86 +1.1 213,334 + +0.2 213,334 + -0.6 213,334 + +1.0 213,334 + -2.3 213,335 - -0.4 213,335 - -4.0 213,335 - +2.3 213,335 - +0.3 213,335 - +0.5 213,335 - -3.3 213,335 - -3.5 213,335 - -0.6 213,335 - -2.2 213,335 - -2.3 213,335 - +0.8 213,335 - -0.0 213,335 - +0.2 213,483 + +0.4 213,484 - -1.2 213,518 + -1.8 213,518 + +0.6 213,518 + -0.4 213,518 + -0.1 213,518 + +0.2 213,518 + +0.3 213,518 + +1.4 213,518 + +0.5 213,518 + -1.8 213,518 + -1.7 213,519 - -0.7 213,519 - -1.2 213,519 - -0.0 213,519 - -1.9 213,519 - -0.4 213,519 - +0.4 213,519 - -1.8 213,519 - -0.1 213,519 - -0.6 213,519 - -0.7 213,519 - -0.1 213,519 - -1.0 213,519 - +0.7 213,519 - -1.0 213,519 - -1.4 213,519 - -0.8 213,519 - -2.7 213,519 - +0.5 213,519 - +1.9 213,519 - -1.0 213,556 - -0.9 213,556 - -0.6 213,728 + LRK53_RS19155 0.25 -1.4 213,728 + LRK53_RS19155 0.25 -0.6 213,836 + LRK53_RS19155 0.38 +0.6 213,875 - LRK53_RS19155 0.42 -1.4 213,956 - LRK53_RS19155 0.52 +0.3 214,068 - LRK53_RS19155 0.65 -1.6 214,280 + -0.1 214,280 + +0.8 214,281 - +1.2 214,281 - +0.5 214,281 - -2.6 214,281 - +1.1 214,344 - -0.1 214,344 - -0.2 214,432 + -0.8 214,432 + -1.0 214,432 + -1.2 214,432 + -0.8 214,432 + -3.4 214,432 + +0.0 214,432 + +0.2 214,432 + -0.3 214,432 + +1.0 214,432 + -1.2 214,432 + +0.1 214,433 - -1.4 214,433 - -0.5 214,433 - -0.6 214,433 - +0.4 214,433 - +0.8 214,433 - -0.6 214,608 + -2.8 214,630 - -2.1
Or see this region's nucleotide sequence