Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS19060 and LRK53_RS19065 are separated by 309 nucleotides LRK53_RS19065 and LRK53_RS19070 are separated by 81 nucleotides LRK53_RS19070 and LRK53_RS19075 overlap by 4 nucleotides LRK53_RS19075 and LRK53_RS19080 are separated by 20 nucleotides
LRK53_RS19060: LRK53_RS19060 - hypothetical protein, at 199,473 to 200,003
_RS19060
LRK53_RS19065: LRK53_RS19065 - hypothetical protein, at 200,313 to 200,822
_RS19065
LRK53_RS19070: LRK53_RS19070 - hypothetical protein, at 200,904 to 201,428
_RS19070
LRK53_RS19075: LRK53_RS19075 - DUF262 domain-containing protein, at 201,425 to 202,009
_RS19075
LRK53_RS19080: LRK53_RS19080 - hypothetical protein, at 202,030 to 202,488
_RS19080
Position (kb) 200
201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 199.932 kb on + strand, within LRK53_RS19060 at 199.932 kb on + strand, within LRK53_RS19060 at 199.932 kb on + strand, within LRK53_RS19060 at 199.933 kb on - strand, within LRK53_RS19060 at 200.001 kb on + strand at 200.001 kb on + strand at 200.002 kb on - strand at 200.018 kb on + strand at 200.019 kb on - strand at 200.019 kb on - strand at 200.101 kb on + strand at 200.102 kb on - strand at 200.102 kb on - strand at 200.184 kb on + strand at 200.184 kb on + strand at 200.185 kb on - strand at 200.185 kb on - strand at 200.197 kb on - strand at 200.197 kb on - strand at 200.204 kb on - strand at 200.485 kb on - strand, within LRK53_RS19065 at 200.485 kb on - strand, within LRK53_RS19065 at 200.787 kb on + strand at 200.788 kb on - strand at 200.988 kb on + strand, within LRK53_RS19070 at 200.988 kb on + strand, within LRK53_RS19070 at 200.988 kb on + strand, within LRK53_RS19070 at 200.988 kb on + strand, within LRK53_RS19070 at 200.989 kb on - strand, within LRK53_RS19070 at 200.989 kb on - strand, within LRK53_RS19070 at 200.989 kb on - strand, within LRK53_RS19070 at 201.145 kb on - strand, within LRK53_RS19070 at 201.168 kb on + strand, within LRK53_RS19070 at 201.168 kb on + strand, within LRK53_RS19070 at 201.168 kb on + strand, within LRK53_RS19070 at 201.168 kb on + strand, within LRK53_RS19070 at 201.168 kb on + strand, within LRK53_RS19070 at 201.168 kb on + strand, within LRK53_RS19070 at 201.168 kb on + strand, within LRK53_RS19070 at 201.168 kb on + strand, within LRK53_RS19070 at 201.168 kb on + strand, within LRK53_RS19070 at 201.169 kb on - strand, within LRK53_RS19070 at 201.169 kb on - strand, within LRK53_RS19070 at 201.169 kb on - strand, within LRK53_RS19070 at 201.169 kb on - strand, within LRK53_RS19070 at 201.169 kb on - strand, within LRK53_RS19070 at 201.306 kb on + strand, within LRK53_RS19070 at 201.306 kb on + strand, within LRK53_RS19070 at 201.306 kb on + strand, within LRK53_RS19070 at 201.384 kb on + strand at 201.384 kb on + strand at 201.385 kb on - strand at 201.385 kb on - strand at 201.653 kb on + strand, within LRK53_RS19075 at 201.654 kb on - strand, within LRK53_RS19075 at 201.654 kb on - strand, within LRK53_RS19075 at 201.656 kb on + strand, within LRK53_RS19075 at 201.657 kb on - strand, within LRK53_RS19075 at 201.657 kb on - strand, within LRK53_RS19075 at 201.657 kb on - strand, within LRK53_RS19075 at 201.657 kb on - strand, within LRK53_RS19075 at 201.657 kb on - strand, within LRK53_RS19075 at 201.718 kb on - strand, within LRK53_RS19075 at 201.834 kb on - strand, within LRK53_RS19075 at 201.896 kb on + strand, within LRK53_RS19075 at 201.896 kb on + strand, within LRK53_RS19075 at 201.896 kb on + strand, within LRK53_RS19075 at 201.896 kb on + strand, within LRK53_RS19075 at 201.896 kb on + strand, within LRK53_RS19075 at 201.896 kb on + strand, within LRK53_RS19075 at 201.897 kb on - strand, within LRK53_RS19075 at 201.897 kb on - strand, within LRK53_RS19075 at 201.897 kb on - strand, within LRK53_RS19075 at 201.897 kb on - strand, within LRK53_RS19075 at 201.897 kb on - strand, within LRK53_RS19075 at 201.897 kb on - strand, within LRK53_RS19075 at 201.897 kb on - strand, within LRK53_RS19075 at 202.029 kb on + strand at 202.029 kb on + strand at 202.029 kb on + strand at 202.029 kb on + strand at 202.029 kb on + strand at 202.030 kb on - strand at 202.030 kb on - strand at 202.030 kb on - strand at 202.037 kb on + strand at 202.050 kb on + strand at 202.050 kb on + strand at 202.050 kb on + strand at 202.051 kb on - strand at 202.051 kb on - strand at 202.051 kb on - strand at 202.121 kb on - strand, within LRK53_RS19080 at 202.121 kb on - strand, within LRK53_RS19080 at 202.121 kb on - strand, within LRK53_RS19080 at 202.151 kb on + strand, within LRK53_RS19080 at 202.151 kb on + strand, within LRK53_RS19080 at 202.151 kb on + strand, within LRK53_RS19080 at 202.151 kb on + strand, within LRK53_RS19080 at 202.151 kb on + strand, within LRK53_RS19080 at 202.152 kb on - strand, within LRK53_RS19080 at 202.152 kb on - strand, within LRK53_RS19080 at 202.152 kb on - strand, within LRK53_RS19080 at 202.152 kb on - strand, within LRK53_RS19080 at 202.152 kb on - strand, within LRK53_RS19080 at 202.268 kb on + strand, within LRK53_RS19080 at 202.268 kb on + strand, within LRK53_RS19080 at 202.268 kb on + strand, within LRK53_RS19080 at 202.268 kb on + strand, within LRK53_RS19080 at 202.268 kb on + strand, within LRK53_RS19080 at 202.269 kb on - strand, within LRK53_RS19080 at 202.269 kb on - strand, within LRK53_RS19080 at 202.269 kb on - strand, within LRK53_RS19080 at 202.269 kb on - strand, within LRK53_RS19080 at 202.363 kb on - strand, within LRK53_RS19080
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 199,932 + LRK53_RS19060 0.86 -2.7 199,932 + LRK53_RS19060 0.86 -1.4 199,932 + LRK53_RS19060 0.86 +0.7 199,933 - LRK53_RS19060 0.87 -0.8 200,001 + -1.6 200,001 + +1.0 200,002 - -2.0 200,018 + -2.0 200,019 - +0.6 200,019 - -1.5 200,101 + +1.2 200,102 - +1.7 200,102 - -1.7 200,184 + -1.7 200,184 + -0.9 200,185 - -2.7 200,185 - +0.5 200,197 - +1.0 200,197 - +0.4 200,204 - +1.7 200,485 - LRK53_RS19065 0.34 -1.8 200,485 - LRK53_RS19065 0.34 -1.8 200,787 + +0.6 200,788 - -0.4 200,988 + LRK53_RS19070 0.16 +0.4 200,988 + LRK53_RS19070 0.16 -0.4 200,988 + LRK53_RS19070 0.16 -0.6 200,988 + LRK53_RS19070 0.16 -0.8 200,989 - LRK53_RS19070 0.16 -1.5 200,989 - LRK53_RS19070 0.16 -2.1 200,989 - LRK53_RS19070 0.16 -0.6 201,145 - LRK53_RS19070 0.46 +0.2 201,168 + LRK53_RS19070 0.50 -0.8 201,168 + LRK53_RS19070 0.50 -1.2 201,168 + LRK53_RS19070 0.50 -2.1 201,168 + LRK53_RS19070 0.50 -0.7 201,168 + LRK53_RS19070 0.50 -0.4 201,168 + LRK53_RS19070 0.50 +0.3 201,168 + LRK53_RS19070 0.50 -1.8 201,168 + LRK53_RS19070 0.50 +1.2 201,168 + LRK53_RS19070 0.50 -1.9 201,169 - LRK53_RS19070 0.50 -0.6 201,169 - LRK53_RS19070 0.50 +1.1 201,169 - LRK53_RS19070 0.50 +2.6 201,169 - LRK53_RS19070 0.50 -0.9 201,169 - LRK53_RS19070 0.50 -1.7 201,306 + LRK53_RS19070 0.77 -0.8 201,306 + LRK53_RS19070 0.77 -1.2 201,306 + LRK53_RS19070 0.77 -1.1 201,384 + -1.0 201,384 + -0.8 201,385 - -0.0 201,385 - -0.8 201,653 + LRK53_RS19075 0.39 -1.4 201,654 - LRK53_RS19075 0.39 +1.6 201,654 - LRK53_RS19075 0.39 -2.9 201,656 + LRK53_RS19075 0.39 -0.4 201,657 - LRK53_RS19075 0.40 -1.0 201,657 - LRK53_RS19075 0.40 +0.4 201,657 - LRK53_RS19075 0.40 +1.0 201,657 - LRK53_RS19075 0.40 +0.1 201,657 - LRK53_RS19075 0.40 -0.8 201,718 - LRK53_RS19075 0.50 -1.2 201,834 - LRK53_RS19075 0.70 +1.6 201,896 + LRK53_RS19075 0.81 -1.8 201,896 + LRK53_RS19075 0.81 +0.1 201,896 + LRK53_RS19075 0.81 +1.0 201,896 + LRK53_RS19075 0.81 +0.2 201,896 + LRK53_RS19075 0.81 -1.8 201,896 + LRK53_RS19075 0.81 -2.4 201,897 - LRK53_RS19075 0.81 +0.3 201,897 - LRK53_RS19075 0.81 -1.4 201,897 - LRK53_RS19075 0.81 -0.9 201,897 - LRK53_RS19075 0.81 -1.0 201,897 - LRK53_RS19075 0.81 -0.8 201,897 - LRK53_RS19075 0.81 -0.8 201,897 - LRK53_RS19075 0.81 -1.6 202,029 + -0.6 202,029 + +0.5 202,029 + +0.6 202,029 + -1.0 202,029 + -1.5 202,030 - -2.0 202,030 - +2.6 202,030 - -2.0 202,037 + -1.1 202,050 + +1.0 202,050 + +1.2 202,050 + -0.1 202,051 - -1.9 202,051 - -1.9 202,051 - +0.2 202,121 - LRK53_RS19080 0.20 -1.6 202,121 - LRK53_RS19080 0.20 -0.4 202,121 - LRK53_RS19080 0.20 -0.5 202,151 + LRK53_RS19080 0.26 -2.2 202,151 + LRK53_RS19080 0.26 +0.6 202,151 + LRK53_RS19080 0.26 +0.4 202,151 + LRK53_RS19080 0.26 -0.5 202,151 + LRK53_RS19080 0.26 -0.4 202,152 - LRK53_RS19080 0.27 -0.4 202,152 - LRK53_RS19080 0.27 +1.9 202,152 - LRK53_RS19080 0.27 -1.5 202,152 - LRK53_RS19080 0.27 -0.9 202,152 - LRK53_RS19080 0.27 -2.2 202,268 + LRK53_RS19080 0.52 -1.2 202,268 + LRK53_RS19080 0.52 -1.5 202,268 + LRK53_RS19080 0.52 -0.4 202,268 + LRK53_RS19080 0.52 +0.8 202,268 + LRK53_RS19080 0.52 -0.0 202,269 - LRK53_RS19080 0.52 -1.4 202,269 - LRK53_RS19080 0.52 +0.2 202,269 - LRK53_RS19080 0.52 +0.4 202,269 - LRK53_RS19080 0.52 +0.6 202,363 - LRK53_RS19080 0.73 -0.8
Or see this region's nucleotide sequence