Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS19050 and LRK53_RS19055 are separated by 144 nucleotides LRK53_RS19055 and LRK53_RS19060 are separated by 137 nucleotides LRK53_RS19060 and LRK53_RS19065 are separated by 309 nucleotides LRK53_RS19065 and LRK53_RS19070 are separated by 81 nucleotides
LRK53_RS19050: LRK53_RS19050 - hypothetical protein, at 198,139 to 198,804
_RS19050
LRK53_RS19055: LRK53_RS19055 - hypothetical protein, at 198,949 to 199,335
_RS19055
LRK53_RS19060: LRK53_RS19060 - hypothetical protein, at 199,473 to 200,003
_RS19060
LRK53_RS19065: LRK53_RS19065 - hypothetical protein, at 200,313 to 200,822
_RS19065
LRK53_RS19070: LRK53_RS19070 - hypothetical protein, at 200,904 to 201,428
_RS19070
Position (kb) 199
200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 198.490 kb on + strand, within LRK53_RS19050 at 198.490 kb on + strand, within LRK53_RS19050 at 198.490 kb on + strand, within LRK53_RS19050 at 198.490 kb on + strand, within LRK53_RS19050 at 198.491 kb on - strand, within LRK53_RS19050 at 198.550 kb on + strand, within LRK53_RS19050 at 198.550 kb on + strand, within LRK53_RS19050 at 198.550 kb on + strand, within LRK53_RS19050 at 198.550 kb on + strand, within LRK53_RS19050 at 198.550 kb on + strand, within LRK53_RS19050 at 198.550 kb on + strand, within LRK53_RS19050 at 198.551 kb on - strand, within LRK53_RS19050 at 198.551 kb on - strand, within LRK53_RS19050 at 198.551 kb on - strand, within LRK53_RS19050 at 198.657 kb on + strand, within LRK53_RS19050 at 198.658 kb on - strand, within LRK53_RS19050 at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.967 kb on + strand at 199.174 kb on + strand, within LRK53_RS19055 at 199.180 kb on + strand, within LRK53_RS19055 at 199.180 kb on + strand, within LRK53_RS19055 at 199.180 kb on + strand, within LRK53_RS19055 at 199.229 kb on + strand, within LRK53_RS19055 at 199.230 kb on - strand, within LRK53_RS19055 at 199.230 kb on - strand, within LRK53_RS19055 at 199.230 kb on - strand, within LRK53_RS19055 at 199.334 kb on - strand at 199.349 kb on - strand at 199.349 kb on - strand at 199.388 kb on + strand at 199.389 kb on - strand at 199.389 kb on - strand at 199.389 kb on - strand at 199.389 kb on - strand at 199.394 kb on + strand at 199.394 kb on + strand at 199.394 kb on + strand at 199.395 kb on - strand at 199.395 kb on - strand at 199.395 kb on - strand at 199.395 kb on - strand at 199.395 kb on - strand at 199.395 kb on - strand at 199.395 kb on - strand at 199.426 kb on + strand at 199.426 kb on + strand at 199.426 kb on + strand at 199.426 kb on + strand at 199.426 kb on + strand at 199.426 kb on + strand at 199.426 kb on + strand at 199.426 kb on + strand at 199.427 kb on - strand at 199.427 kb on - strand at 199.427 kb on - strand at 199.427 kb on - strand at 199.427 kb on - strand at 199.701 kb on + strand, within LRK53_RS19060 at 199.702 kb on - strand, within LRK53_RS19060 at 199.702 kb on - strand, within LRK53_RS19060 at 199.774 kb on + strand, within LRK53_RS19060 at 199.774 kb on + strand, within LRK53_RS19060 at 199.774 kb on + strand, within LRK53_RS19060 at 199.774 kb on + strand, within LRK53_RS19060 at 199.775 kb on - strand, within LRK53_RS19060 at 199.775 kb on - strand, within LRK53_RS19060 at 199.775 kb on - strand, within LRK53_RS19060 at 199.775 kb on - strand, within LRK53_RS19060 at 199.775 kb on - strand, within LRK53_RS19060 at 199.775 kb on - strand, within LRK53_RS19060 at 199.932 kb on + strand, within LRK53_RS19060 at 199.932 kb on + strand, within LRK53_RS19060 at 199.932 kb on + strand, within LRK53_RS19060 at 199.933 kb on - strand, within LRK53_RS19060 at 200.001 kb on + strand at 200.001 kb on + strand at 200.002 kb on - strand at 200.018 kb on + strand at 200.019 kb on - strand at 200.019 kb on - strand at 200.101 kb on + strand at 200.102 kb on - strand at 200.102 kb on - strand at 200.184 kb on + strand at 200.184 kb on + strand at 200.185 kb on - strand at 200.185 kb on - strand at 200.197 kb on - strand at 200.197 kb on - strand at 200.204 kb on - strand at 200.485 kb on - strand, within LRK53_RS19065 at 200.485 kb on - strand, within LRK53_RS19065 at 200.787 kb on + strand at 200.788 kb on - strand at 200.988 kb on + strand, within LRK53_RS19070 at 200.988 kb on + strand, within LRK53_RS19070 at 200.988 kb on + strand, within LRK53_RS19070 at 200.988 kb on + strand, within LRK53_RS19070 at 200.989 kb on - strand, within LRK53_RS19070 at 200.989 kb on - strand, within LRK53_RS19070 at 200.989 kb on - strand, within LRK53_RS19070
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 198,490 + LRK53_RS19050 0.53 -0.4 198,490 + LRK53_RS19050 0.53 +0.1 198,490 + LRK53_RS19050 0.53 -0.6 198,490 + LRK53_RS19050 0.53 -1.7 198,491 - LRK53_RS19050 0.53 +0.9 198,550 + LRK53_RS19050 0.62 -1.0 198,550 + LRK53_RS19050 0.62 +1.0 198,550 + LRK53_RS19050 0.62 -1.9 198,550 + LRK53_RS19050 0.62 +3.0 198,550 + LRK53_RS19050 0.62 -1.6 198,550 + LRK53_RS19050 0.62 -2.1 198,551 - LRK53_RS19050 0.62 +2.5 198,551 - LRK53_RS19050 0.62 -0.6 198,551 - LRK53_RS19050 0.62 -0.8 198,657 + LRK53_RS19050 0.78 +0.3 198,658 - LRK53_RS19050 0.78 -2.1 198,742 + +0.2 198,742 + +0.7 198,742 + +2.4 198,742 + -0.4 198,742 + -0.3 198,742 + +2.0 198,742 + -1.5 198,742 + +0.6 198,742 + +0.7 198,742 + -0.7 198,742 + -1.6 198,742 + -0.8 198,742 + -0.4 198,742 + -2.8 198,742 + -2.0 198,742 + -1.1 198,742 + +1.6 198,742 + +0.2 198,742 + -1.8 198,742 + -1.6 198,742 + -1.0 198,742 + -0.2 198,742 + -0.8 198,742 + -0.0 198,743 - -0.2 198,743 - -0.9 198,743 - +0.4 198,743 - -0.4 198,743 - +1.1 198,743 - +0.5 198,743 - -0.8 198,743 - +0.0 198,743 - -1.6 198,743 - +0.5 198,743 - +0.2 198,743 - +1.2 198,743 - -0.4 198,743 - -0.0 198,743 - -1.1 198,743 - -0.4 198,743 - -0.8 198,743 - -2.0 198,743 - -0.4 198,743 - -0.7 198,743 - -0.5 198,743 - -0.4 198,743 - +0.3 198,743 - -0.1 198,743 - -0.6 198,743 - -1.7 198,743 - -1.2 198,743 - +0.4 198,743 - +0.7 198,967 + -1.2 199,174 + LRK53_RS19055 0.58 +1.5 199,180 + LRK53_RS19055 0.60 -0.5 199,180 + LRK53_RS19055 0.60 -1.6 199,180 + LRK53_RS19055 0.60 -1.1 199,229 + LRK53_RS19055 0.72 +1.4 199,230 - LRK53_RS19055 0.73 +1.1 199,230 - LRK53_RS19055 0.73 +1.7 199,230 - LRK53_RS19055 0.73 -1.8 199,334 - -1.0 199,349 - -0.8 199,349 - -1.2 199,388 + -1.4 199,389 - -1.7 199,389 - -0.4 199,389 - +0.4 199,389 - -3.5 199,394 + -1.8 199,394 + +0.6 199,394 + -0.8 199,395 - -0.8 199,395 - -1.5 199,395 - -0.8 199,395 - -1.0 199,395 - -0.8 199,395 - +0.7 199,395 - -0.8 199,426 + +0.6 199,426 + -1.7 199,426 + +0.4 199,426 + -0.6 199,426 + +1.2 199,426 + +1.6 199,426 + -0.6 199,426 + -1.4 199,427 - +1.0 199,427 - -2.4 199,427 - +1.0 199,427 - -2.1 199,427 - -0.4 199,701 + LRK53_RS19060 0.43 +0.1 199,702 - LRK53_RS19060 0.43 -0.8 199,702 - LRK53_RS19060 0.43 +0.0 199,774 + LRK53_RS19060 0.57 -1.0 199,774 + LRK53_RS19060 0.57 +4.8 199,774 + LRK53_RS19060 0.57 -3.7 199,774 + LRK53_RS19060 0.57 -2.6 199,775 - LRK53_RS19060 0.57 -0.7 199,775 - LRK53_RS19060 0.57 -2.0 199,775 - LRK53_RS19060 0.57 -1.3 199,775 - LRK53_RS19060 0.57 -0.6 199,775 - LRK53_RS19060 0.57 -1.5 199,775 - LRK53_RS19060 0.57 -3.4 199,932 + LRK53_RS19060 0.86 -2.7 199,932 + LRK53_RS19060 0.86 -1.4 199,932 + LRK53_RS19060 0.86 +0.7 199,933 - LRK53_RS19060 0.87 -0.8 200,001 + -1.6 200,001 + +1.0 200,002 - -2.0 200,018 + -2.0 200,019 - +0.6 200,019 - -1.5 200,101 + +1.2 200,102 - +1.7 200,102 - -1.7 200,184 + -1.7 200,184 + -0.9 200,185 - -2.7 200,185 - +0.5 200,197 - +1.0 200,197 - +0.4 200,204 - +1.7 200,485 - LRK53_RS19065 0.34 -1.8 200,485 - LRK53_RS19065 0.34 -1.8 200,787 + +0.6 200,788 - -0.4 200,988 + LRK53_RS19070 0.16 +0.4 200,988 + LRK53_RS19070 0.16 -0.4 200,988 + LRK53_RS19070 0.16 -0.6 200,988 + LRK53_RS19070 0.16 -0.8 200,989 - LRK53_RS19070 0.16 -1.5 200,989 - LRK53_RS19070 0.16 -2.1 200,989 - LRK53_RS19070 0.16 -0.6
Or see this region's nucleotide sequence