Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18915 and LRK53_RS18920 are separated by 355 nucleotides LRK53_RS18920 and LRK53_RS18925 overlap by 4 nucleotides LRK53_RS18925 and LRK53_RS18930 overlap by 22 nucleotides
LRK53_RS18915: LRK53_RS18915 - hypothetical protein, at 179,348 to 179,944
_RS18915
LRK53_RS18920: LRK53_RS18920 - S49 family peptidase, at 180,300 to 181,295
_RS18920
LRK53_RS18925: LRK53_RS18925 - hypothetical protein, at 181,292 to 181,768
_RS18925
LRK53_RS18930: LRK53_RS18930 - hypothetical protein, at 181,747 to 182,415
_RS18930
Position (kb) 180
181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 179.341 kb on + strand at 179.341 kb on + strand at 179.341 kb on + strand at 179.341 kb on + strand at 179.341 kb on + strand at 179.341 kb on + strand at 179.341 kb on + strand at 179.341 kb on + strand at 179.342 kb on - strand at 179.342 kb on - strand at 179.342 kb on - strand at 179.342 kb on - strand at 179.342 kb on - strand at 179.342 kb on - strand at 179.342 kb on - strand at 179.345 kb on + strand at 179.345 kb on + strand at 179.345 kb on + strand at 179.345 kb on + strand at 179.345 kb on + strand at 179.345 kb on + strand at 179.345 kb on + strand at 179.345 kb on + strand at 179.345 kb on + strand at 179.345 kb on + strand at 179.345 kb on + strand at 179.345 kb on + strand at 179.345 kb on + strand at 179.345 kb on + strand at 179.345 kb on + strand at 179.346 kb on - strand at 179.346 kb on - strand at 179.346 kb on - strand at 179.346 kb on - strand at 179.346 kb on - strand at 179.346 kb on - strand at 179.346 kb on - strand at 179.346 kb on - strand at 179.346 kb on - strand at 179.346 kb on - strand at 179.346 kb on - strand at 179.346 kb on - strand at 179.346 kb on - strand at 179.346 kb on - strand at 179.379 kb on + strand at 179.379 kb on + strand at 179.379 kb on + strand at 179.379 kb on + strand at 179.379 kb on + strand at 179.379 kb on + strand at 179.380 kb on - strand at 179.380 kb on - strand at 179.380 kb on - strand at 179.380 kb on - strand at 179.380 kb on - strand at 179.380 kb on - strand at 179.576 kb on + strand, within LRK53_RS18915 at 179.576 kb on + strand, within LRK53_RS18915 at 179.576 kb on + strand, within LRK53_RS18915 at 179.576 kb on + strand, within LRK53_RS18915 at 179.576 kb on + strand, within LRK53_RS18915 at 179.577 kb on - strand, within LRK53_RS18915 at 179.628 kb on - strand, within LRK53_RS18915 at 179.628 kb on - strand, within LRK53_RS18915 at 179.628 kb on - strand, within LRK53_RS18915 at 179.628 kb on - strand, within LRK53_RS18915 at 179.628 kb on - strand, within LRK53_RS18915 at 179.669 kb on + strand, within LRK53_RS18915 at 179.669 kb on + strand, within LRK53_RS18915 at 179.675 kb on + strand, within LRK53_RS18915 at 179.676 kb on - strand, within LRK53_RS18915 at 179.676 kb on - strand, within LRK53_RS18915 at 179.676 kb on - strand, within LRK53_RS18915 at 179.676 kb on - strand, within LRK53_RS18915 at 179.676 kb on - strand, within LRK53_RS18915 at 179.750 kb on + strand, within LRK53_RS18915 at 179.751 kb on - strand, within LRK53_RS18915 at 179.751 kb on - strand, within LRK53_RS18915 at 179.751 kb on - strand, within LRK53_RS18915 at 179.858 kb on + strand, within LRK53_RS18915 at 179.858 kb on + strand, within LRK53_RS18915 at 179.859 kb on - strand, within LRK53_RS18915 at 179.859 kb on - strand, within LRK53_RS18915 at 179.859 kb on - strand, within LRK53_RS18915 at 179.943 kb on - strand at 180.060 kb on - strand at 180.060 kb on - strand at 180.060 kb on - strand at 180.298 kb on + strand at 180.298 kb on + strand at 180.298 kb on + strand at 180.298 kb on + strand at 180.298 kb on + strand at 180.299 kb on - strand at 180.299 kb on - strand at 180.299 kb on - strand at 180.299 kb on - strand at 180.299 kb on - strand at 180.299 kb on - strand at 180.309 kb on - strand at 180.309 kb on - strand at 180.489 kb on + strand, within LRK53_RS18920 at 180.490 kb on - strand, within LRK53_RS18920 at 180.728 kb on + strand, within LRK53_RS18920 at 180.729 kb on - strand, within LRK53_RS18920 at 180.729 kb on - strand, within LRK53_RS18920 at 180.729 kb on - strand, within LRK53_RS18920 at 180.762 kb on + strand, within LRK53_RS18920 at 180.762 kb on + strand, within LRK53_RS18920 at 180.762 kb on + strand, within LRK53_RS18920 at 180.762 kb on + strand, within LRK53_RS18920 at 180.762 kb on + strand, within LRK53_RS18920 at 180.762 kb on + strand, within LRK53_RS18920 at 180.762 kb on + strand, within LRK53_RS18920 at 180.762 kb on + strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.798 kb on + strand, within LRK53_RS18920 at 180.798 kb on + strand, within LRK53_RS18920 at 180.798 kb on + strand, within LRK53_RS18920 at 180.798 kb on + strand, within LRK53_RS18920 at 180.799 kb on - strand, within LRK53_RS18920 at 180.799 kb on - strand, within LRK53_RS18920 at 180.799 kb on - strand, within LRK53_RS18920 at 180.799 kb on - strand, within LRK53_RS18920 at 180.799 kb on - strand, within LRK53_RS18920 at 180.799 kb on - strand, within LRK53_RS18920 at 180.829 kb on - strand, within LRK53_RS18920 at 180.829 kb on - strand, within LRK53_RS18920 at 180.840 kb on + strand, within LRK53_RS18920 at 180.840 kb on + strand, within LRK53_RS18920 at 180.840 kb on + strand, within LRK53_RS18920 at 180.841 kb on - strand, within LRK53_RS18920 at 180.841 kb on - strand, within LRK53_RS18920 at 180.841 kb on - strand, within LRK53_RS18920 at 180.841 kb on - strand, within LRK53_RS18920 at 180.841 kb on - strand, within LRK53_RS18920 at 180.841 kb on - strand, within LRK53_RS18920 at 180.876 kb on + strand, within LRK53_RS18920 at 180.877 kb on - strand, within LRK53_RS18920 at 180.877 kb on - strand, within LRK53_RS18920 at 181.316 kb on + strand at 181.316 kb on + strand at 181.316 kb on + strand at 181.316 kb on + strand at 181.316 kb on + strand at 181.316 kb on + strand at 181.317 kb on - strand at 181.317 kb on - strand at 181.317 kb on - strand at 181.317 kb on - strand at 181.317 kb on - strand at 181.317 kb on - strand at 181.317 kb on - strand at 181.317 kb on - strand at 181.619 kb on + strand, within LRK53_RS18925 at 181.619 kb on + strand, within LRK53_RS18925 at 181.619 kb on + strand, within LRK53_RS18925 at 181.619 kb on + strand, within LRK53_RS18925 at 181.619 kb on + strand, within LRK53_RS18925 at 181.619 kb on + strand, within LRK53_RS18925 at 181.619 kb on + strand, within LRK53_RS18925 at 181.620 kb on - strand, within LRK53_RS18925 at 181.620 kb on - strand, within LRK53_RS18925 at 181.620 kb on - strand, within LRK53_RS18925 at 181.620 kb on - strand, within LRK53_RS18925 at 181.620 kb on - strand, within LRK53_RS18925 at 181.620 kb on - strand, within LRK53_RS18925 at 181.620 kb on - strand, within LRK53_RS18925 at 181.622 kb on + strand, within LRK53_RS18925 at 181.622 kb on + strand, within LRK53_RS18925 at 181.622 kb on + strand, within LRK53_RS18925 at 181.622 kb on + strand, within LRK53_RS18925 at 181.622 kb on + strand, within LRK53_RS18925 at 181.622 kb on + strand, within LRK53_RS18925 at 181.623 kb on - strand, within LRK53_RS18925 at 181.623 kb on - strand, within LRK53_RS18925 at 181.623 kb on - strand, within LRK53_RS18925 at 181.623 kb on - strand, within LRK53_RS18925 at 181.623 kb on - strand, within LRK53_RS18925 at 181.787 kb on + strand at 181.787 kb on + strand at 181.788 kb on - strand at 181.788 kb on - strand at 181.872 kb on + strand, within LRK53_RS18930 at 181.873 kb on - strand, within LRK53_RS18930 at 182.092 kb on + strand, within LRK53_RS18930 at 182.092 kb on + strand, within LRK53_RS18930 at 182.092 kb on + strand, within LRK53_RS18930 at 182.092 kb on + strand, within LRK53_RS18930 at 182.093 kb on - strand, within LRK53_RS18930 at 182.093 kb on - strand, within LRK53_RS18930 at 182.093 kb on - strand, within LRK53_RS18930 at 182.237 kb on - strand, within LRK53_RS18930 at 182.237 kb on - strand, within LRK53_RS18930 at 182.237 kb on - strand, within LRK53_RS18930
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 179,341 + -1.6 179,341 + +1.9 179,341 + +0.1 179,341 + -1.3 179,341 + -1.6 179,341 + -1.6 179,341 + -0.1 179,341 + -1.2 179,342 - -0.6 179,342 - -0.7 179,342 - +0.0 179,342 - +0.1 179,342 - +0.4 179,342 - +0.5 179,342 - -1.1 179,345 + -2.0 179,345 + -2.2 179,345 + -2.0 179,345 + -2.2 179,345 + -1.6 179,345 + +1.4 179,345 + -0.3 179,345 + -0.1 179,345 + -0.6 179,345 + -2.4 179,345 + -1.6 179,345 + -0.4 179,345 + -2.8 179,345 + +0.7 179,345 + +0.2 179,346 - +1.3 179,346 - -1.2 179,346 - +0.3 179,346 - +1.5 179,346 - -1.5 179,346 - -1.3 179,346 - +0.0 179,346 - +0.5 179,346 - -1.1 179,346 - -0.1 179,346 - -1.1 179,346 - -2.2 179,346 - -0.6 179,346 - -0.9 179,379 + +0.3 179,379 + -1.7 179,379 + -1.6 179,379 + +0.9 179,379 + -0.9 179,379 + -0.1 179,380 - -1.3 179,380 - -0.7 179,380 - +0.1 179,380 - -2.8 179,380 - -1.8 179,380 - -2.2 179,576 + LRK53_RS18915 0.38 -1.5 179,576 + LRK53_RS18915 0.38 -1.3 179,576 + LRK53_RS18915 0.38 -1.8 179,576 + LRK53_RS18915 0.38 -0.5 179,576 + LRK53_RS18915 0.38 -0.1 179,577 - LRK53_RS18915 0.38 -0.7 179,628 - LRK53_RS18915 0.47 -1.3 179,628 - LRK53_RS18915 0.47 +1.2 179,628 - LRK53_RS18915 0.47 -2.0 179,628 - LRK53_RS18915 0.47 -0.7 179,628 - LRK53_RS18915 0.47 -0.5 179,669 + LRK53_RS18915 0.54 -1.6 179,669 + LRK53_RS18915 0.54 -2.1 179,675 + LRK53_RS18915 0.55 -0.1 179,676 - LRK53_RS18915 0.55 -0.7 179,676 - LRK53_RS18915 0.55 -1.3 179,676 - LRK53_RS18915 0.55 -1.1 179,676 - LRK53_RS18915 0.55 -0.5 179,676 - LRK53_RS18915 0.55 -0.1 179,750 + LRK53_RS18915 0.67 +0.9 179,751 - LRK53_RS18915 0.68 -2.4 179,751 - LRK53_RS18915 0.68 -0.4 179,751 - LRK53_RS18915 0.68 -1.1 179,858 + LRK53_RS18915 0.85 -1.1 179,858 + LRK53_RS18915 0.85 -0.3 179,859 - LRK53_RS18915 0.86 -1.7 179,859 - LRK53_RS18915 0.86 -0.7 179,859 - LRK53_RS18915 0.86 -0.6 179,943 - -1.1 180,060 - -1.6 180,060 - +1.9 180,060 - -0.8 180,298 + -1.3 180,298 + -0.7 180,298 + -0.6 180,298 + +2.9 180,298 + +0.3 180,299 - -2.0 180,299 - -0.4 180,299 - -1.0 180,299 - -0.9 180,299 - -0.9 180,299 - -1.1 180,309 - -1.0 180,309 - +1.0 180,489 + LRK53_RS18920 0.19 +1.0 180,490 - LRK53_RS18920 0.19 -0.0 180,728 + LRK53_RS18920 0.43 -1.7 180,729 - LRK53_RS18920 0.43 +0.3 180,729 - LRK53_RS18920 0.43 -3.0 180,729 - LRK53_RS18920 0.43 -3.4 180,762 + LRK53_RS18920 0.46 +0.3 180,762 + LRK53_RS18920 0.46 -1.1 180,762 + LRK53_RS18920 0.46 -0.1 180,762 + LRK53_RS18920 0.46 +0.4 180,762 + LRK53_RS18920 0.46 -2.8 180,762 + LRK53_RS18920 0.46 -0.4 180,762 + LRK53_RS18920 0.46 -1.3 180,762 + LRK53_RS18920 0.46 -0.9 180,763 - LRK53_RS18920 0.46 -1.3 180,763 - LRK53_RS18920 0.46 +0.2 180,763 - LRK53_RS18920 0.46 -2.0 180,763 - LRK53_RS18920 0.46 -1.3 180,763 - LRK53_RS18920 0.46 -0.3 180,763 - LRK53_RS18920 0.46 -2.3 180,763 - LRK53_RS18920 0.46 -1.1 180,763 - LRK53_RS18920 0.46 -0.9 180,763 - LRK53_RS18920 0.46 -0.5 180,763 - LRK53_RS18920 0.46 -2.6 180,798 + LRK53_RS18920 0.50 +0.9 180,798 + LRK53_RS18920 0.50 -2.4 180,798 + LRK53_RS18920 0.50 +1.4 180,798 + LRK53_RS18920 0.50 -1.9 180,799 - LRK53_RS18920 0.50 +1.1 180,799 - LRK53_RS18920 0.50 +0.6 180,799 - LRK53_RS18920 0.50 -1.3 180,799 - LRK53_RS18920 0.50 -0.9 180,799 - LRK53_RS18920 0.50 -1.8 180,799 - LRK53_RS18920 0.50 +0.9 180,829 - LRK53_RS18920 0.53 -1.6 180,829 - LRK53_RS18920 0.53 -1.3 180,840 + LRK53_RS18920 0.54 +0.4 180,840 + LRK53_RS18920 0.54 -0.1 180,840 + LRK53_RS18920 0.54 -2.5 180,841 - LRK53_RS18920 0.54 -1.6 180,841 - LRK53_RS18920 0.54 -1.1 180,841 - LRK53_RS18920 0.54 -0.4 180,841 - LRK53_RS18920 0.54 -1.3 180,841 - LRK53_RS18920 0.54 -1.7 180,841 - LRK53_RS18920 0.54 -2.1 180,876 + LRK53_RS18920 0.58 +1.4 180,877 - LRK53_RS18920 0.58 -2.7 180,877 - LRK53_RS18920 0.58 -0.1 181,316 + +1.4 181,316 + -1.3 181,316 + -0.8 181,316 + -1.3 181,316 + +0.1 181,316 + +0.3 181,317 - +0.2 181,317 - -0.6 181,317 - +0.2 181,317 - -1.1 181,317 - -0.2 181,317 - -0.7 181,317 - +0.3 181,317 - +1.2 181,619 + LRK53_RS18925 0.69 -2.2 181,619 + LRK53_RS18925 0.69 -1.9 181,619 + LRK53_RS18925 0.69 -1.5 181,619 + LRK53_RS18925 0.69 -2.3 181,619 + LRK53_RS18925 0.69 +0.9 181,619 + LRK53_RS18925 0.69 -3.0 181,619 + LRK53_RS18925 0.69 +0.3 181,620 - LRK53_RS18925 0.69 -0.9 181,620 - LRK53_RS18925 0.69 +1.3 181,620 - LRK53_RS18925 0.69 -2.5 181,620 - LRK53_RS18925 0.69 +0.1 181,620 - LRK53_RS18925 0.69 +1.5 181,620 - LRK53_RS18925 0.69 -1.5 181,620 - LRK53_RS18925 0.69 -1.8 181,622 + LRK53_RS18925 0.69 -0.7 181,622 + LRK53_RS18925 0.69 -1.1 181,622 + LRK53_RS18925 0.69 +1.0 181,622 + LRK53_RS18925 0.69 -1.2 181,622 + LRK53_RS18925 0.69 -1.2 181,622 + LRK53_RS18925 0.69 +1.3 181,623 - LRK53_RS18925 0.69 -2.7 181,623 - LRK53_RS18925 0.69 -1.1 181,623 - LRK53_RS18925 0.69 -0.5 181,623 - LRK53_RS18925 0.69 -0.9 181,623 - LRK53_RS18925 0.69 +0.5 181,787 + -0.7 181,787 + -0.9 181,788 - +0.5 181,788 - -0.0 181,872 + LRK53_RS18930 0.19 -0.6 181,873 - LRK53_RS18930 0.19 -0.9 182,092 + LRK53_RS18930 0.52 -1.3 182,092 + LRK53_RS18930 0.52 -0.0 182,092 + LRK53_RS18930 0.52 +0.2 182,092 + LRK53_RS18930 0.52 -0.9 182,093 - LRK53_RS18930 0.52 -3.2 182,093 - LRK53_RS18930 0.52 -0.5 182,093 - LRK53_RS18930 0.52 -1.8 182,237 - LRK53_RS18930 0.73 +0.3 182,237 - LRK53_RS18930 0.73 +0.2 182,237 - LRK53_RS18930 0.73 -0.4
Or see this region's nucleotide sequence