Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18840 and LRK53_RS18845 are separated by 17 nucleotides LRK53_RS18845 and LRK53_RS18850 overlap by 4 nucleotides LRK53_RS18850 and LRK53_RS18855 are separated by 156 nucleotides LRK53_RS18855 and LRK53_RS18860 are separated by 272 nucleotides
LRK53_RS18840: LRK53_RS18840 - type-F conjugative transfer system secretin TraK, at 159,140 to 160,135
_RS18840
LRK53_RS18845: LRK53_RS18845 - hypothetical protein, at 160,153 to 160,767
_RS18845
LRK53_RS18850: LRK53_RS18850 - type IV conjugative transfer system protein TraL, at 160,764 to 161,054
_RS18850
LRK53_RS18855: LRK53_RS18855 - hypothetical protein, at 161,211 to 161,624
_RS18855
LRK53_RS18860: LRK53_RS18860 - hypothetical protein, at 161,897 to 162,163
_RS18860
Position (kb) 160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 160.117 kb on + strand at 160.117 kb on + strand at 160.229 kb on + strand, within LRK53_RS18845 at 160.229 kb on + strand, within LRK53_RS18845 at 160.229 kb on + strand, within LRK53_RS18845 at 160.259 kb on + strand, within LRK53_RS18845 at 160.259 kb on + strand, within LRK53_RS18845 at 160.259 kb on + strand, within LRK53_RS18845 at 160.259 kb on + strand, within LRK53_RS18845 at 160.259 kb on + strand, within LRK53_RS18845 at 160.260 kb on - strand, within LRK53_RS18845 at 160.547 kb on + strand, within LRK53_RS18845 at 160.548 kb on - strand, within LRK53_RS18845 at 160.548 kb on - strand, within LRK53_RS18845 at 160.647 kb on + strand, within LRK53_RS18845 at 160.647 kb on + strand, within LRK53_RS18845 at 160.751 kb on + strand at 160.837 kb on + strand, within LRK53_RS18850 at 160.861 kb on + strand, within LRK53_RS18850 at 160.897 kb on + strand, within LRK53_RS18850 at 160.898 kb on - strand, within LRK53_RS18850 at 160.898 kb on - strand, within LRK53_RS18850 at 160.900 kb on + strand, within LRK53_RS18850 at 160.972 kb on - strand, within LRK53_RS18850 at 161.212 kb on + strand at 161.212 kb on + strand at 161.213 kb on - strand at 161.287 kb on - strand, within LRK53_RS18855 at 161.501 kb on + strand, within LRK53_RS18855 at 161.569 kb on + strand, within LRK53_RS18855 at 161.569 kb on + strand, within LRK53_RS18855 at 161.569 kb on + strand, within LRK53_RS18855 at 161.569 kb on + strand, within LRK53_RS18855 at 161.569 kb on + strand, within LRK53_RS18855 at 161.569 kb on + strand, within LRK53_RS18855 at 161.570 kb on - strand, within LRK53_RS18855 at 161.570 kb on - strand, within LRK53_RS18855 at 161.570 kb on - strand, within LRK53_RS18855 at 161.570 kb on - strand, within LRK53_RS18855 at 161.570 kb on - strand, within LRK53_RS18855 at 161.570 kb on - strand, within LRK53_RS18855 at 161.594 kb on + strand at 161.595 kb on - strand at 161.595 kb on - strand at 161.595 kb on - strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.752 kb on + strand at 161.789 kb on + strand at 161.790 kb on - strand at 161.804 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.880 kb on + strand at 161.880 kb on + strand at 161.880 kb on + strand at 161.880 kb on + strand at 161.880 kb on + strand at 161.880 kb on + strand at 161.881 kb on - strand at 161.881 kb on - strand at 161.881 kb on - strand at 161.881 kb on - strand at 161.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 160,117 + -2.8 160,117 + -0.0 160,229 + LRK53_RS18845 0.12 +2.0 160,229 + LRK53_RS18845 0.12 +0.7 160,229 + LRK53_RS18845 0.12 -1.0 160,259 + LRK53_RS18845 0.17 -0.6 160,259 + LRK53_RS18845 0.17 -0.3 160,259 + LRK53_RS18845 0.17 -2.2 160,259 + LRK53_RS18845 0.17 +0.1 160,259 + LRK53_RS18845 0.17 -1.0 160,260 - LRK53_RS18845 0.17 +0.7 160,547 + LRK53_RS18845 0.64 +1.0 160,548 - LRK53_RS18845 0.64 +1.5 160,548 - LRK53_RS18845 0.64 -0.7 160,647 + LRK53_RS18845 0.80 -1.0 160,647 + LRK53_RS18845 0.80 -0.4 160,751 + +0.2 160,837 + LRK53_RS18850 0.25 -0.6 160,861 + LRK53_RS18850 0.33 -1.9 160,897 + LRK53_RS18850 0.46 -0.4 160,898 - LRK53_RS18850 0.46 -2.9 160,898 - LRK53_RS18850 0.46 -1.7 160,900 + LRK53_RS18850 0.47 -1.5 160,972 - LRK53_RS18850 0.71 -0.4 161,212 + -0.4 161,212 + -0.1 161,213 - -0.8 161,287 - LRK53_RS18855 0.18 -1.6 161,501 + LRK53_RS18855 0.70 -1.2 161,569 + LRK53_RS18855 0.86 +2.8 161,569 + LRK53_RS18855 0.86 -1.5 161,569 + LRK53_RS18855 0.86 -2.0 161,569 + LRK53_RS18855 0.86 -1.8 161,569 + LRK53_RS18855 0.86 -0.2 161,569 + LRK53_RS18855 0.86 +2.4 161,570 - LRK53_RS18855 0.87 +0.1 161,570 - LRK53_RS18855 0.87 -1.3 161,570 - LRK53_RS18855 0.87 -0.8 161,570 - LRK53_RS18855 0.87 -1.2 161,570 - LRK53_RS18855 0.87 +1.0 161,570 - LRK53_RS18855 0.87 -0.1 161,594 + -1.7 161,595 - -1.4 161,595 - +0.8 161,595 - -0.2 161,615 + -2.6 161,615 + -0.6 161,615 + -0.5 161,615 + +0.1 161,615 + -1.7 161,615 + -0.8 161,615 + -0.0 161,615 + +1.2 161,615 + -0.8 161,616 - -0.7 161,616 - -1.0 161,616 - +0.1 161,616 - -0.4 161,616 - +0.8 161,616 - -0.5 161,616 - -0.4 161,616 - +1.0 161,616 - +0.4 161,616 - -0.6 161,616 - -0.4 161,616 - +0.6 161,752 + -0.0 161,789 + -0.3 161,790 - +0.6 161,804 + -1.2 161,863 + +1.1 161,863 + +0.2 161,863 + +1.3 161,863 + -0.6 161,863 + -3.3 161,863 + +0.1 161,863 + -1.5 161,863 + -1.6 161,863 + +0.9 161,863 + -3.7 161,863 + -1.0 161,863 + -1.5 161,863 + -1.1 161,863 + -3.3 161,863 + +3.0 161,864 - -0.6 161,864 - -0.1 161,864 - -2.0 161,864 - +0.8 161,864 - -1.7 161,864 - +3.8 161,864 - -0.9 161,864 - -0.8 161,864 - +0.3 161,864 - -2.1 161,880 + -1.7 161,880 + -0.8 161,880 + -1.0 161,880 + -0.1 161,880 + +2.0 161,880 + +0.3 161,881 - -1.0 161,881 - -1.1 161,881 - -0.0 161,881 - -1.0 161,881 - -1.4
Or see this region's nucleotide sequence