Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18820 and LRK53_RS18825 are separated by 68 nucleotides LRK53_RS18825 and LRK53_RS18830 are separated by 15 nucleotides LRK53_RS18830 and LRK53_RS18835 are separated by 85 nucleotides
LRK53_RS18820: LRK53_RS18820 - type IV secretion system protein TraC, at 154,120 to 156,549
_RS18820
LRK53_RS18825: LRK53_RS18825 - hypothetical protein, at 156,618 to 156,995
_RS18825
LRK53_RS18830: LRK53_RS18830 - TraV family lipoprotein, at 157,011 to 157,766
_RS18830
LRK53_RS18835: LRK53_RS18835 - TraB/VirB10 family protein, at 157,852 to 159,138
_RS18835
Position (kb) 157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 156.020 kb on + strand, within LRK53_RS18820 at 156.020 kb on + strand, within LRK53_RS18820 at 156.020 kb on + strand, within LRK53_RS18820 at 156.021 kb on - strand, within LRK53_RS18820 at 156.021 kb on - strand, within LRK53_RS18820 at 156.021 kb on - strand, within LRK53_RS18820 at 156.405 kb on + strand at 156.405 kb on + strand at 156.406 kb on - strand at 156.406 kb on - strand at 156.462 kb on + strand at 156.462 kb on + strand at 156.462 kb on + strand at 156.539 kb on + strand at 156.540 kb on - strand at 156.544 kb on - strand at 156.544 kb on - strand at 156.544 kb on - strand at 156.661 kb on + strand, within LRK53_RS18825 at 156.670 kb on - strand, within LRK53_RS18825 at 156.805 kb on + strand, within LRK53_RS18825 at 156.805 kb on + strand, within LRK53_RS18825 at 156.805 kb on + strand, within LRK53_RS18825 at 156.806 kb on - strand, within LRK53_RS18825 at 156.886 kb on + strand, within LRK53_RS18825 at 156.886 kb on + strand, within LRK53_RS18825 at 156.887 kb on - strand, within LRK53_RS18825 at 156.887 kb on - strand, within LRK53_RS18825 at 157.012 kb on + strand at 157.235 kb on - strand, within LRK53_RS18830 at 157.497 kb on + strand, within LRK53_RS18830 at 157.497 kb on + strand, within LRK53_RS18830 at 157.498 kb on - strand, within LRK53_RS18830 at 157.573 kb on - strand, within LRK53_RS18830 at 157.633 kb on + strand, within LRK53_RS18830 at 157.741 kb on - strand at 157.741 kb on - strand at 157.741 kb on - strand at 157.803 kb on + strand at 157.804 kb on - strand at 157.955 kb on + strand at 157.956 kb on - strand at 157.958 kb on + strand at 157.958 kb on + strand at 157.958 kb on + strand at 157.958 kb on + strand at 157.958 kb on + strand at 157.958 kb on + strand at 157.958 kb on + strand at 157.959 kb on - strand at 157.959 kb on - strand at 158.024 kb on + strand, within LRK53_RS18835 at 158.025 kb on - strand, within LRK53_RS18835 at 158.255 kb on + strand, within LRK53_RS18835 at 158.255 kb on + strand, within LRK53_RS18835 at 158.255 kb on + strand, within LRK53_RS18835 at 158.255 kb on + strand, within LRK53_RS18835 at 158.256 kb on - strand, within LRK53_RS18835 at 158.311 kb on + strand, within LRK53_RS18835 at 158.311 kb on + strand, within LRK53_RS18835 at 158.312 kb on - strand, within LRK53_RS18835 at 158.312 kb on - strand, within LRK53_RS18835 at 158.328 kb on + strand, within LRK53_RS18835 at 158.328 kb on + strand, within LRK53_RS18835 at 158.328 kb on + strand, within LRK53_RS18835 at 158.328 kb on + strand, within LRK53_RS18835 at 158.328 kb on + strand, within LRK53_RS18835 at 158.329 kb on - strand, within LRK53_RS18835 at 158.329 kb on - strand, within LRK53_RS18835 at 158.329 kb on - strand, within LRK53_RS18835 at 158.456 kb on + strand, within LRK53_RS18835 at 158.456 kb on + strand, within LRK53_RS18835 at 158.456 kb on + strand, within LRK53_RS18835 at 158.456 kb on + strand, within LRK53_RS18835 at 158.456 kb on + strand, within LRK53_RS18835 at 158.456 kb on + strand, within LRK53_RS18835 at 158.456 kb on + strand, within LRK53_RS18835 at 158.456 kb on + strand, within LRK53_RS18835 at 158.456 kb on + strand, within LRK53_RS18835 at 158.456 kb on + strand, within LRK53_RS18835 at 158.456 kb on + strand, within LRK53_RS18835 at 158.457 kb on - strand, within LRK53_RS18835 at 158.457 kb on - strand, within LRK53_RS18835 at 158.457 kb on - strand, within LRK53_RS18835 at 158.457 kb on - strand, within LRK53_RS18835 at 158.457 kb on - strand, within LRK53_RS18835 at 158.457 kb on - strand, within LRK53_RS18835 at 158.457 kb on - strand, within LRK53_RS18835 at 158.457 kb on - strand, within LRK53_RS18835 at 158.457 kb on - strand, within LRK53_RS18835
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 156,020 + LRK53_RS18820 0.78 -0.3 156,020 + LRK53_RS18820 0.78 -0.7 156,020 + LRK53_RS18820 0.78 +1.0 156,021 - LRK53_RS18820 0.78 -2.1 156,021 - LRK53_RS18820 0.78 -0.4 156,021 - LRK53_RS18820 0.78 +1.2 156,405 + -2.8 156,405 + +2.6 156,406 - +0.6 156,406 - +0.7 156,462 + +0.6 156,462 + -0.6 156,462 + +1.6 156,539 + +0.5 156,540 - -1.0 156,544 - +2.4 156,544 - +2.0 156,544 - -0.5 156,661 + LRK53_RS18825 0.11 -1.0 156,670 - LRK53_RS18825 0.14 -0.1 156,805 + LRK53_RS18825 0.49 -0.7 156,805 + LRK53_RS18825 0.49 -0.7 156,805 + LRK53_RS18825 0.49 -0.6 156,806 - LRK53_RS18825 0.50 +0.4 156,886 + LRK53_RS18825 0.71 -0.4 156,886 + LRK53_RS18825 0.71 +1.0 156,887 - LRK53_RS18825 0.71 -1.0 156,887 - LRK53_RS18825 0.71 -0.9 157,012 + -3.1 157,235 - LRK53_RS18830 0.30 -1.9 157,497 + LRK53_RS18830 0.64 -1.5 157,497 + LRK53_RS18830 0.64 +0.4 157,498 - LRK53_RS18830 0.64 +0.4 157,573 - LRK53_RS18830 0.74 -0.9 157,633 + LRK53_RS18830 0.82 -2.0 157,741 - +0.6 157,741 - -0.4 157,741 - -1.4 157,803 + +2.0 157,804 - +0.2 157,955 + +1.6 157,956 - +0.6 157,958 + -0.9 157,958 + -1.0 157,958 + +2.8 157,958 + -0.8 157,958 + +1.4 157,958 + -0.8 157,958 + -0.4 157,959 - -2.3 157,959 - -0.0 158,024 + LRK53_RS18835 0.13 -0.2 158,025 - LRK53_RS18835 0.13 +1.2 158,255 + LRK53_RS18835 0.31 -0.1 158,255 + LRK53_RS18835 0.31 -1.5 158,255 + LRK53_RS18835 0.31 -1.0 158,255 + LRK53_RS18835 0.31 -1.4 158,256 - LRK53_RS18835 0.31 +0.4 158,311 + LRK53_RS18835 0.36 -3.3 158,311 + LRK53_RS18835 0.36 +0.5 158,312 - LRK53_RS18835 0.36 -0.6 158,312 - LRK53_RS18835 0.36 -0.4 158,328 + LRK53_RS18835 0.37 -0.1 158,328 + LRK53_RS18835 0.37 -1.0 158,328 + LRK53_RS18835 0.37 -0.8 158,328 + LRK53_RS18835 0.37 -0.9 158,328 + LRK53_RS18835 0.37 -1.7 158,329 - LRK53_RS18835 0.37 -1.2 158,329 - LRK53_RS18835 0.37 +1.7 158,329 - LRK53_RS18835 0.37 -0.8 158,456 + LRK53_RS18835 0.47 +0.4 158,456 + LRK53_RS18835 0.47 -1.0 158,456 + LRK53_RS18835 0.47 +0.8 158,456 + LRK53_RS18835 0.47 -0.6 158,456 + LRK53_RS18835 0.47 +2.0 158,456 + LRK53_RS18835 0.47 +0.8 158,456 + LRK53_RS18835 0.47 -0.2 158,456 + LRK53_RS18835 0.47 -0.4 158,456 + LRK53_RS18835 0.47 +1.0 158,456 + LRK53_RS18835 0.47 -1.2 158,456 + LRK53_RS18835 0.47 -1.7 158,457 - LRK53_RS18835 0.47 -0.6 158,457 - LRK53_RS18835 0.47 -1.6 158,457 - LRK53_RS18835 0.47 +0.6 158,457 - LRK53_RS18835 0.47 -1.4 158,457 - LRK53_RS18835 0.47 -0.9 158,457 - LRK53_RS18835 0.47 -1.2 158,457 - LRK53_RS18835 0.47 +1.0 158,457 - LRK53_RS18835 0.47 -1.7 158,457 - LRK53_RS18835 0.47 -1.5
Or see this region's nucleotide sequence