Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18660 and LRK53_RS18665 are separated by 268 nucleotides LRK53_RS18665 and LRK53_RS18670 are separated by 9 nucleotides LRK53_RS18670 and LRK53_RS18675 overlap by 41 nucleotides
LRK53_RS18660: LRK53_RS18660 - type II toxin-antitoxin system MqsR family toxin, at 118,910 to 119,206
_RS18660
LRK53_RS18665: LRK53_RS18665 - hypothetical protein, at 119,475 to 120,146
_RS18665
LRK53_RS18670: LRK53_RS18670 - translesion DNA synthesis-associated protein ImuA, at 120,156 to 120,818
_RS18670
LRK53_RS18675: LRK53_RS18675 - DNA polymerase Y family protein, at 120,778 to 122,163
_RS18675
Position (kb) 120
121 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 119.222 kb on + strand at 119.223 kb on - strand at 119.223 kb on - strand at 119.223 kb on - strand at 119.223 kb on - strand at 119.223 kb on - strand at 119.225 kb on + strand at 119.225 kb on + strand at 119.243 kb on + strand at 119.243 kb on + strand at 119.243 kb on + strand at 119.244 kb on - strand at 119.308 kb on + strand at 119.309 kb on - strand at 119.368 kb on + strand at 119.368 kb on + strand at 119.369 kb on - strand at 119.383 kb on - strand at 119.426 kb on + strand at 119.426 kb on + strand at 119.426 kb on + strand at 119.426 kb on + strand at 119.426 kb on + strand at 119.427 kb on - strand at 119.427 kb on - strand at 119.427 kb on - strand at 119.470 kb on + strand at 119.470 kb on + strand at 119.471 kb on - strand at 119.471 kb on - strand at 119.493 kb on + strand at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.642 kb on + strand, within LRK53_RS18665 at 119.643 kb on - strand, within LRK53_RS18665 at 119.643 kb on - strand, within LRK53_RS18665 at 119.643 kb on - strand, within LRK53_RS18665 at 119.643 kb on - strand, within LRK53_RS18665 at 119.923 kb on - strand, within LRK53_RS18665 at 119.923 kb on - strand, within LRK53_RS18665 at 119.923 kb on - strand, within LRK53_RS18665 at 119.923 kb on - strand, within LRK53_RS18665 at 119.961 kb on + strand, within LRK53_RS18665 at 119.961 kb on + strand, within LRK53_RS18665 at 120.314 kb on - strand, within LRK53_RS18670 at 120.314 kb on - strand, within LRK53_RS18670 at 120.316 kb on + strand, within LRK53_RS18670 at 120.316 kb on + strand, within LRK53_RS18670 at 120.316 kb on + strand, within LRK53_RS18670 at 120.316 kb on + strand, within LRK53_RS18670 at 120.317 kb on - strand, within LRK53_RS18670 at 120.317 kb on - strand, within LRK53_RS18670 at 120.317 kb on - strand, within LRK53_RS18670 at 120.727 kb on + strand, within LRK53_RS18670 at 120.727 kb on + strand, within LRK53_RS18670 at 120.727 kb on + strand, within LRK53_RS18670 at 120.727 kb on + strand, within LRK53_RS18670 at 120.728 kb on - strand, within LRK53_RS18670 at 120.728 kb on - strand, within LRK53_RS18670 at 120.728 kb on - strand, within LRK53_RS18670 at 121.469 kb on + strand, within LRK53_RS18675 at 121.470 kb on - strand, within LRK53_RS18675 at 121.555 kb on + strand, within LRK53_RS18675 at 121.556 kb on - strand, within LRK53_RS18675
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 119,222 + +0.2 119,223 - -1.4 119,223 - -0.0 119,223 - -1.0 119,223 - +0.1 119,223 - -0.2 119,225 + +0.2 119,225 + +1.5 119,243 + +2.5 119,243 + +0.4 119,243 + +0.2 119,244 - -0.8 119,308 + -0.6 119,309 - -0.4 119,368 + -0.1 119,368 + +2.0 119,369 - -1.1 119,383 - +0.6 119,426 + -1.2 119,426 + +2.0 119,426 + -1.0 119,426 + -0.5 119,426 + +0.6 119,427 - +2.0 119,427 - +1.6 119,427 - -0.9 119,470 + -2.0 119,470 + -0.6 119,471 - -0.6 119,471 - -1.5 119,493 + +3.0 119,574 + LRK53_RS18665 0.15 -1.0 119,574 + LRK53_RS18665 0.15 -0.8 119,574 + LRK53_RS18665 0.15 +3.0 119,574 + LRK53_RS18665 0.15 +1.2 119,574 + LRK53_RS18665 0.15 -1.3 119,574 + LRK53_RS18665 0.15 -1.0 119,574 + LRK53_RS18665 0.15 -0.6 119,574 + LRK53_RS18665 0.15 -0.7 119,574 + LRK53_RS18665 0.15 +0.0 119,574 + LRK53_RS18665 0.15 -1.4 119,574 + LRK53_RS18665 0.15 -0.3 119,574 + LRK53_RS18665 0.15 -2.7 119,574 + LRK53_RS18665 0.15 -2.3 119,575 - LRK53_RS18665 0.15 -0.0 119,575 - LRK53_RS18665 0.15 -0.9 119,575 - LRK53_RS18665 0.15 -0.0 119,575 - LRK53_RS18665 0.15 -0.8 119,575 - LRK53_RS18665 0.15 +0.6 119,575 - LRK53_RS18665 0.15 -0.3 119,575 - LRK53_RS18665 0.15 -2.6 119,575 - LRK53_RS18665 0.15 +0.6 119,575 - LRK53_RS18665 0.15 +1.2 119,575 - LRK53_RS18665 0.15 -1.1 119,575 - LRK53_RS18665 0.15 -1.0 119,575 - LRK53_RS18665 0.15 -1.6 119,642 + LRK53_RS18665 0.25 -1.8 119,643 - LRK53_RS18665 0.25 +0.4 119,643 - LRK53_RS18665 0.25 -0.4 119,643 - LRK53_RS18665 0.25 -2.4 119,643 - LRK53_RS18665 0.25 +1.2 119,923 - LRK53_RS18665 0.67 -2.4 119,923 - LRK53_RS18665 0.67 -1.0 119,923 - LRK53_RS18665 0.67 +0.5 119,923 - LRK53_RS18665 0.67 -0.6 119,961 + LRK53_RS18665 0.72 -1.2 119,961 + LRK53_RS18665 0.72 -2.0 120,314 - LRK53_RS18670 0.24 +0.2 120,314 - LRK53_RS18670 0.24 +0.5 120,316 + LRK53_RS18670 0.24 +0.6 120,316 + LRK53_RS18670 0.24 -0.8 120,316 + LRK53_RS18670 0.24 -1.0 120,316 + LRK53_RS18670 0.24 -2.7 120,317 - LRK53_RS18670 0.24 -0.0 120,317 - LRK53_RS18670 0.24 +0.7 120,317 - LRK53_RS18670 0.24 -1.5 120,727 + LRK53_RS18670 0.86 -2.2 120,727 + LRK53_RS18670 0.86 -0.8 120,727 + LRK53_RS18670 0.86 +0.4 120,727 + LRK53_RS18670 0.86 -1.0 120,728 - LRK53_RS18670 0.86 -1.3 120,728 - LRK53_RS18670 0.86 -2.4 120,728 - LRK53_RS18670 0.86 -2.9 121,469 + LRK53_RS18675 0.50 -0.4 121,470 - LRK53_RS18675 0.50 -0.4 121,555 + LRK53_RS18675 0.56 -2.3 121,556 - LRK53_RS18675 0.56 +1.0
Or see this region's nucleotide sequence