Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18450 and LRK53_RS18455 are separated by 30 nucleotides LRK53_RS18455 and LRK53_RS18460 are separated by 62 nucleotides LRK53_RS18460 and LRK53_RS18465 are separated by 136 nucleotides
LRK53_RS18450: LRK53_RS18450 - hypothetical protein, at 64,679 to 64,990
_RS18450
LRK53_RS18455: LRK53_RS18455 - DUF3761 domain-containing protein, at 65,021 to 65,623
_RS18455
LRK53_RS18460: LRK53_RS18460 - hypothetical protein, at 65,686 to 66,612
_RS18460
LRK53_RS18465: LRK53_RS18465 - hypothetical protein, at 66,749 to 67,123
_RS18465
Position (kb) 65
66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 64.750 kb on + strand, within LRK53_RS18450 at 64.751 kb on - strand, within LRK53_RS18450 at 64.868 kb on + strand, within LRK53_RS18450 at 64.868 kb on + strand, within LRK53_RS18450 at 64.868 kb on + strand, within LRK53_RS18450 at 64.868 kb on + strand, within LRK53_RS18450 at 64.868 kb on + strand, within LRK53_RS18450 at 64.868 kb on + strand, within LRK53_RS18450 at 64.869 kb on - strand, within LRK53_RS18450 at 64.869 kb on - strand, within LRK53_RS18450 at 64.869 kb on - strand, within LRK53_RS18450 at 64.869 kb on - strand, within LRK53_RS18450 at 64.869 kb on - strand, within LRK53_RS18450 at 64.869 kb on - strand, within LRK53_RS18450 at 64.895 kb on + strand, within LRK53_RS18450 at 64.895 kb on + strand, within LRK53_RS18450 at 64.896 kb on - strand, within LRK53_RS18450 at 64.896 kb on - strand, within LRK53_RS18450 at 65.020 kb on + strand at 65.020 kb on + strand at 65.020 kb on + strand at 65.020 kb on + strand at 65.021 kb on - strand at 65.021 kb on - strand at 65.021 kb on - strand at 65.021 kb on - strand at 65.021 kb on - strand at 65.180 kb on + strand, within LRK53_RS18455 at 65.180 kb on + strand, within LRK53_RS18455 at 65.180 kb on + strand, within LRK53_RS18455 at 65.181 kb on - strand, within LRK53_RS18455 at 65.181 kb on - strand, within LRK53_RS18455 at 65.393 kb on + strand, within LRK53_RS18455 at 65.393 kb on + strand, within LRK53_RS18455 at 65.393 kb on + strand, within LRK53_RS18455 at 65.393 kb on + strand, within LRK53_RS18455 at 65.394 kb on - strand, within LRK53_RS18455 at 65.394 kb on - strand, within LRK53_RS18455 at 65.394 kb on - strand, within LRK53_RS18455 at 65.473 kb on + strand, within LRK53_RS18455 at 65.473 kb on + strand, within LRK53_RS18455 at 65.473 kb on + strand, within LRK53_RS18455 at 65.473 kb on + strand, within LRK53_RS18455 at 65.473 kb on + strand, within LRK53_RS18455 at 65.474 kb on - strand, within LRK53_RS18455 at 65.474 kb on - strand, within LRK53_RS18455 at 65.474 kb on - strand, within LRK53_RS18455 at 65.474 kb on - strand, within LRK53_RS18455 at 65.474 kb on - strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.526 kb on - strand, within LRK53_RS18455 at 65.526 kb on - strand, within LRK53_RS18455 at 65.526 kb on - strand, within LRK53_RS18455 at 65.644 kb on + strand at 65.644 kb on + strand at 65.644 kb on + strand at 65.644 kb on + strand at 65.644 kb on + strand at 65.647 kb on + strand at 65.647 kb on + strand at 65.712 kb on - strand at 65.712 kb on - strand at 65.764 kb on + strand at 65.764 kb on + strand at 65.764 kb on + strand at 65.764 kb on + strand at 65.764 kb on + strand at 65.765 kb on - strand at 65.765 kb on - strand at 65.765 kb on - strand at 65.765 kb on - strand at 65.765 kb on - strand at 66.184 kb on + strand, within LRK53_RS18460 at 66.185 kb on - strand, within LRK53_RS18460 at 66.435 kb on - strand, within LRK53_RS18460 at 66.572 kb on + strand at 66.716 kb on + strand at 66.716 kb on + strand at 66.717 kb on - strand at 66.717 kb on - strand at 66.717 kb on - strand at 66.717 kb on - strand at 66.717 kb on - strand at 66.761 kb on + strand at 66.761 kb on + strand at 66.794 kb on + strand, within LRK53_RS18465 at 66.794 kb on + strand, within LRK53_RS18465 at 66.927 kb on + strand, within LRK53_RS18465 at 66.927 kb on + strand, within LRK53_RS18465 at 66.927 kb on + strand, within LRK53_RS18465 at 66.927 kb on + strand, within LRK53_RS18465 at 66.927 kb on + strand, within LRK53_RS18465 at 66.927 kb on + strand, within LRK53_RS18465 at 66.927 kb on + strand, within LRK53_RS18465 at 66.927 kb on + strand, within LRK53_RS18465 at 66.928 kb on - strand, within LRK53_RS18465 at 66.928 kb on - strand, within LRK53_RS18465 at 66.949 kb on + strand, within LRK53_RS18465 at 66.949 kb on + strand, within LRK53_RS18465 at 66.949 kb on + strand, within LRK53_RS18465 at 66.949 kb on + strand, within LRK53_RS18465 at 66.950 kb on - strand, within LRK53_RS18465 at 67.085 kb on + strand, within LRK53_RS18465 at 67.085 kb on + strand, within LRK53_RS18465 at 67.085 kb on + strand, within LRK53_RS18465 at 67.085 kb on + strand, within LRK53_RS18465 at 67.085 kb on + strand, within LRK53_RS18465 at 67.086 kb on - strand at 67.086 kb on - strand at 67.086 kb on - strand at 67.086 kb on - strand at 67.086 kb on - strand at 67.086 kb on - strand at 67.086 kb on - strand at 67.301 kb on + strand at 67.301 kb on + strand at 67.301 kb on + strand at 67.301 kb on + strand at 67.301 kb on + strand at 67.301 kb on + strand at 67.301 kb on + strand at 67.301 kb on + strand at 67.301 kb on + strand at 67.301 kb on + strand at 67.301 kb on + strand at 67.302 kb on - strand at 67.302 kb on - strand at 67.302 kb on - strand at 67.302 kb on - strand at 67.302 kb on - strand at 67.302 kb on - strand at 67.302 kb on - strand at 67.302 kb on - strand at 67.302 kb on - strand at 67.302 kb on - strand at 67.398 kb on + strand at 67.399 kb on - strand at 67.399 kb on - strand at 67.399 kb on - strand at 67.404 kb on + strand at 67.404 kb on + strand at 67.404 kb on + strand at 67.404 kb on + strand at 67.405 kb on - strand at 67.405 kb on - strand at 67.405 kb on - strand at 67.405 kb on - strand at 67.405 kb on - strand at 67.530 kb on + strand at 67.530 kb on + strand at 67.530 kb on + strand at 67.530 kb on + strand at 67.530 kb on + strand at 67.530 kb on + strand at 67.530 kb on + strand at 67.531 kb on - strand at 67.531 kb on - strand at 67.531 kb on - strand at 67.531 kb on - strand at 67.531 kb on - strand at 67.531 kb on - strand at 67.531 kb on - strand at 67.572 kb on + strand at 67.573 kb on - strand at 67.589 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 64,750 + LRK53_RS18450 0.23 +0.4 64,751 - LRK53_RS18450 0.23 -2.9 64,868 + LRK53_RS18450 0.61 -0.1 64,868 + LRK53_RS18450 0.61 -0.8 64,868 + LRK53_RS18450 0.61 +0.9 64,868 + LRK53_RS18450 0.61 +2.2 64,868 + LRK53_RS18450 0.61 +2.0 64,868 + LRK53_RS18450 0.61 -1.4 64,869 - LRK53_RS18450 0.61 +0.7 64,869 - LRK53_RS18450 0.61 +0.2 64,869 - LRK53_RS18450 0.61 +0.7 64,869 - LRK53_RS18450 0.61 +1.0 64,869 - LRK53_RS18450 0.61 -0.4 64,869 - LRK53_RS18450 0.61 +0.6 64,895 + LRK53_RS18450 0.69 -0.0 64,895 + LRK53_RS18450 0.69 +0.7 64,896 - LRK53_RS18450 0.70 -0.2 64,896 - LRK53_RS18450 0.70 -0.5 65,020 + +1.5 65,020 + -1.9 65,020 + +0.8 65,020 + -0.3 65,021 - -1.0 65,021 - +1.0 65,021 - +0.4 65,021 - -1.0 65,021 - -0.6 65,180 + LRK53_RS18455 0.26 -2.2 65,180 + LRK53_RS18455 0.26 +1.1 65,180 + LRK53_RS18455 0.26 -0.4 65,181 - LRK53_RS18455 0.27 -0.8 65,181 - LRK53_RS18455 0.27 -0.8 65,393 + LRK53_RS18455 0.62 +2.6 65,393 + LRK53_RS18455 0.62 -1.3 65,393 + LRK53_RS18455 0.62 +0.4 65,393 + LRK53_RS18455 0.62 -0.8 65,394 - LRK53_RS18455 0.62 +1.0 65,394 - LRK53_RS18455 0.62 -0.6 65,394 - LRK53_RS18455 0.62 +0.3 65,473 + LRK53_RS18455 0.75 -1.0 65,473 + LRK53_RS18455 0.75 -0.6 65,473 + LRK53_RS18455 0.75 -1.7 65,473 + LRK53_RS18455 0.75 +2.0 65,473 + LRK53_RS18455 0.75 -0.4 65,474 - LRK53_RS18455 0.75 +1.0 65,474 - LRK53_RS18455 0.75 -0.6 65,474 - LRK53_RS18455 0.75 -0.2 65,474 - LRK53_RS18455 0.75 -1.6 65,474 - LRK53_RS18455 0.75 -0.4 65,525 + LRK53_RS18455 0.84 +3.2 65,525 + LRK53_RS18455 0.84 -2.0 65,525 + LRK53_RS18455 0.84 +0.5 65,525 + LRK53_RS18455 0.84 -1.0 65,525 + LRK53_RS18455 0.84 +1.2 65,525 + LRK53_RS18455 0.84 +1.6 65,525 + LRK53_RS18455 0.84 -1.7 65,525 + LRK53_RS18455 0.84 -0.5 65,525 + LRK53_RS18455 0.84 -1.0 65,525 + LRK53_RS18455 0.84 -2.6 65,525 + LRK53_RS18455 0.84 -1.1 65,526 - LRK53_RS18455 0.84 +1.6 65,526 - LRK53_RS18455 0.84 -0.6 65,526 - LRK53_RS18455 0.84 -1.4 65,644 + -1.2 65,644 + +0.7 65,644 + -0.6 65,644 + +0.2 65,644 + +1.0 65,647 + -0.0 65,647 + -0.6 65,712 - +0.3 65,712 - -1.7 65,764 + +1.5 65,764 + -0.8 65,764 + +0.3 65,764 + +0.1 65,764 + +2.0 65,765 - -1.9 65,765 - +0.9 65,765 - -1.8 65,765 - +1.2 65,765 - +0.0 66,184 + LRK53_RS18460 0.54 -2.8 66,185 - LRK53_RS18460 0.54 -1.6 66,435 - LRK53_RS18460 0.81 -0.1 66,572 + -0.9 66,716 + +1.6 66,716 + +1.2 66,717 - +1.1 66,717 - +0.4 66,717 - -1.0 66,717 - +0.0 66,717 - -0.6 66,761 + +0.3 66,761 + -1.1 66,794 + LRK53_RS18465 0.12 -0.4 66,794 + LRK53_RS18465 0.12 -1.4 66,927 + LRK53_RS18465 0.47 -0.6 66,927 + LRK53_RS18465 0.47 -1.4 66,927 + LRK53_RS18465 0.47 +1.3 66,927 + LRK53_RS18465 0.47 -0.6 66,927 + LRK53_RS18465 0.47 +0.1 66,927 + LRK53_RS18465 0.47 -0.6 66,927 + LRK53_RS18465 0.47 -0.4 66,927 + LRK53_RS18465 0.47 -0.5 66,928 - LRK53_RS18465 0.48 -2.4 66,928 - LRK53_RS18465 0.48 -0.1 66,949 + LRK53_RS18465 0.53 -3.5 66,949 + LRK53_RS18465 0.53 +0.4 66,949 + LRK53_RS18465 0.53 +0.4 66,949 + LRK53_RS18465 0.53 -1.5 66,950 - LRK53_RS18465 0.54 +1.0 67,085 + LRK53_RS18465 0.90 +0.1 67,085 + LRK53_RS18465 0.90 +0.1 67,085 + LRK53_RS18465 0.90 -0.2 67,085 + LRK53_RS18465 0.90 -2.8 67,085 + LRK53_RS18465 0.90 -1.2 67,086 - +0.8 67,086 - -0.1 67,086 - +0.0 67,086 - +1.0 67,086 - +0.1 67,086 - -2.2 67,086 - +0.4 67,301 + +0.5 67,301 + +2.0 67,301 + -0.8 67,301 + -1.2 67,301 + -2.0 67,301 + -0.3 67,301 + +0.0 67,301 + -1.1 67,301 + -0.8 67,301 + -1.5 67,301 + +0.4 67,302 - -1.2 67,302 - -1.6 67,302 - +0.3 67,302 - -0.9 67,302 - -0.6 67,302 - +1.1 67,302 - -2.4 67,302 - -0.4 67,302 - -0.1 67,302 - +2.8 67,398 + -2.6 67,399 - -0.6 67,399 - -0.8 67,399 - -0.2 67,404 + -2.1 67,404 + -1.9 67,404 + +0.4 67,404 + -0.4 67,405 - +0.1 67,405 - -0.7 67,405 - -0.5 67,405 - +0.5 67,405 - +1.0 67,530 + -0.8 67,530 + +0.9 67,530 + +1.0 67,530 + -0.6 67,530 + -0.7 67,530 + +0.7 67,530 + -0.0 67,531 - -1.4 67,531 - -2.8 67,531 - -0.0 67,531 - -0.7 67,531 - -0.0 67,531 - -0.5 67,531 - +2.0 67,572 + +0.6 67,573 - -1.0 67,589 + -0.5
Or see this region's nucleotide sequence