Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18410 and LRK53_RS18415 are separated by 24 nucleotides LRK53_RS18415 and LRK53_RS18420 are separated by 137 nucleotides LRK53_RS18420 and LRK53_RS18425 are separated by 101 nucleotides
LRK53_RS18410: LRK53_RS18410 - hypothetical protein, at 57,252 to 58,565
_RS18410
LRK53_RS18415: LRK53_RS18415 - hypothetical protein, at 58,590 to 59,072
_RS18415
LRK53_RS18420: LRK53_RS18420 - hypothetical protein, at 59,210 to 59,743
_RS18420
LRK53_RS18425: LRK53_RS18425 - hypothetical protein, at 59,845 to 60,381
_RS18425
Position (kb) 58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 57.748 kb on + strand, within LRK53_RS18410 at 57.749 kb on - strand, within LRK53_RS18410 at 57.749 kb on - strand, within LRK53_RS18410 at 58.006 kb on - strand, within LRK53_RS18410 at 58.106 kb on + strand, within LRK53_RS18410 at 58.106 kb on + strand, within LRK53_RS18410 at 58.106 kb on + strand, within LRK53_RS18410 at 58.107 kb on - strand, within LRK53_RS18410 at 58.119 kb on + strand, within LRK53_RS18410 at 58.119 kb on + strand, within LRK53_RS18410 at 58.119 kb on + strand, within LRK53_RS18410 at 58.119 kb on + strand, within LRK53_RS18410 at 58.120 kb on - strand, within LRK53_RS18410 at 58.120 kb on - strand, within LRK53_RS18410 at 58.120 kb on - strand, within LRK53_RS18410 at 58.188 kb on + strand, within LRK53_RS18410 at 58.188 kb on + strand, within LRK53_RS18410 at 58.338 kb on + strand, within LRK53_RS18410 at 58.339 kb on - strand, within LRK53_RS18410 at 58.426 kb on + strand, within LRK53_RS18410 at 58.426 kb on + strand, within LRK53_RS18410 at 58.427 kb on - strand, within LRK53_RS18410 at 58.446 kb on + strand at 58.503 kb on + strand at 58.503 kb on + strand at 58.551 kb on + strand at 58.551 kb on + strand at 58.607 kb on + strand at 58.608 kb on - strand at 58.608 kb on - strand at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.840 kb on - strand, within LRK53_RS18415 at 58.840 kb on - strand, within LRK53_RS18415 at 58.840 kb on - strand, within LRK53_RS18415 at 58.840 kb on - strand, within LRK53_RS18415 at 58.840 kb on - strand, within LRK53_RS18415 at 58.840 kb on - strand, within LRK53_RS18415 at 58.840 kb on - strand, within LRK53_RS18415 at 59.093 kb on + strand at 59.093 kb on + strand at 59.094 kb on - strand at 59.195 kb on + strand at 59.195 kb on + strand at 59.195 kb on + strand at 59.196 kb on - strand at 59.196 kb on - strand at 59.196 kb on - strand at 59.196 kb on - strand at 59.196 kb on - strand at 59.224 kb on + strand at 59.224 kb on + strand at 59.224 kb on + strand at 59.224 kb on + strand at 59.224 kb on + strand at 59.288 kb on + strand, within LRK53_RS18420 at 59.499 kb on - strand, within LRK53_RS18420 at 59.570 kb on + strand, within LRK53_RS18420 at 59.654 kb on + strand, within LRK53_RS18420 at 59.654 kb on + strand, within LRK53_RS18420 at 59.655 kb on - strand, within LRK53_RS18420 at 59.655 kb on - strand, within LRK53_RS18420 at 59.655 kb on - strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.694 kb on + strand at 59.694 kb on + strand at 59.694 kb on + strand at 59.694 kb on + strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.773 kb on - strand at 59.955 kb on + strand, within LRK53_RS18425 at 59.955 kb on + strand, within LRK53_RS18425 at 59.956 kb on - strand, within LRK53_RS18425 at 59.956 kb on - strand, within LRK53_RS18425 at 59.978 kb on + strand, within LRK53_RS18425 at 60.005 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 57,748 + LRK53_RS18410 0.38 -1.2 57,749 - LRK53_RS18410 0.38 +0.3 57,749 - LRK53_RS18410 0.38 +2.3 58,006 - LRK53_RS18410 0.57 -2.7 58,106 + LRK53_RS18410 0.65 +1.9 58,106 + LRK53_RS18410 0.65 -0.5 58,106 + LRK53_RS18410 0.65 -0.5 58,107 - LRK53_RS18410 0.65 -0.2 58,119 + LRK53_RS18410 0.66 -1.1 58,119 + LRK53_RS18410 0.66 -1.5 58,119 + LRK53_RS18410 0.66 +0.6 58,119 + LRK53_RS18410 0.66 -0.5 58,120 - LRK53_RS18410 0.66 -0.2 58,120 - LRK53_RS18410 0.66 -0.0 58,120 - LRK53_RS18410 0.66 -0.7 58,188 + LRK53_RS18410 0.71 -0.7 58,188 + LRK53_RS18410 0.71 -0.7 58,338 + LRK53_RS18410 0.83 -1.0 58,339 - LRK53_RS18410 0.83 -1.2 58,426 + LRK53_RS18410 0.89 -1.1 58,426 + LRK53_RS18410 0.89 -1.3 58,427 - LRK53_RS18410 0.89 -0.3 58,446 + +0.4 58,503 + +1.4 58,503 + -0.5 58,551 + -1.2 58,551 + +2.4 58,607 + -1.1 58,608 - -2.1 58,608 - +0.1 58,839 + LRK53_RS18415 0.52 -0.8 58,839 + LRK53_RS18415 0.52 +1.0 58,839 + LRK53_RS18415 0.52 -0.9 58,839 + LRK53_RS18415 0.52 -0.1 58,839 + LRK53_RS18415 0.52 +1.2 58,839 + LRK53_RS18415 0.52 -0.7 58,839 + LRK53_RS18415 0.52 -0.1 58,839 + LRK53_RS18415 0.52 +0.9 58,839 + LRK53_RS18415 0.52 -0.6 58,839 + LRK53_RS18415 0.52 -1.1 58,839 + LRK53_RS18415 0.52 -0.6 58,839 + LRK53_RS18415 0.52 +0.9 58,840 - LRK53_RS18415 0.52 -1.9 58,840 - LRK53_RS18415 0.52 -1.1 58,840 - LRK53_RS18415 0.52 -1.2 58,840 - LRK53_RS18415 0.52 -1.5 58,840 - LRK53_RS18415 0.52 -2.9 58,840 - LRK53_RS18415 0.52 +1.1 58,840 - LRK53_RS18415 0.52 +0.3 59,093 + +1.1 59,093 + -0.1 59,094 - +0.6 59,195 + +0.9 59,195 + -0.1 59,195 + -1.7 59,196 - -2.1 59,196 - -0.7 59,196 - -0.7 59,196 - -0.5 59,196 - -2.1 59,224 + +0.0 59,224 + +0.5 59,224 + +0.0 59,224 + -0.3 59,224 + +0.6 59,288 + LRK53_RS18420 0.15 +0.2 59,499 - LRK53_RS18420 0.54 +1.9 59,570 + LRK53_RS18420 0.67 +0.8 59,654 + LRK53_RS18420 0.83 -0.8 59,654 + LRK53_RS18420 0.83 -0.5 59,655 - LRK53_RS18420 0.83 -0.1 59,655 - LRK53_RS18420 0.83 -1.8 59,655 - LRK53_RS18420 0.83 +0.2 59,656 + LRK53_RS18420 0.84 +0.3 59,656 + LRK53_RS18420 0.84 +1.0 59,656 + LRK53_RS18420 0.84 +0.1 59,656 + LRK53_RS18420 0.84 -1.5 59,656 + LRK53_RS18420 0.84 +0.6 59,656 + LRK53_RS18420 0.84 -0.1 59,656 + LRK53_RS18420 0.84 -0.2 59,657 - LRK53_RS18420 0.84 -0.5 59,657 - LRK53_RS18420 0.84 -1.9 59,657 - LRK53_RS18420 0.84 -0.1 59,657 - LRK53_RS18420 0.84 +0.4 59,694 + -0.9 59,694 + +2.7 59,694 + +2.7 59,694 + -1.1 59,695 - -1.3 59,695 - -2.1 59,695 - -0.5 59,695 - -1.5 59,695 - -0.5 59,773 - -1.2 59,955 + LRK53_RS18425 0.20 +0.7 59,955 + LRK53_RS18425 0.20 -0.9 59,956 - LRK53_RS18425 0.21 -1.1 59,956 - LRK53_RS18425 0.21 +0.6 59,978 + LRK53_RS18425 0.25 +0.9 60,005 + LRK53_RS18425 0.30 +0.8 60,033 + LRK53_RS18425 0.35 -2.2 60,033 + LRK53_RS18425 0.35 +0.3 60,033 + LRK53_RS18425 0.35 -0.5 60,033 + LRK53_RS18425 0.35 -0.2 60,033 + LRK53_RS18425 0.35 -2.3 60,033 + LRK53_RS18425 0.35 -1.7 60,033 + LRK53_RS18425 0.35 -0.6 60,033 + LRK53_RS18425 0.35 -2.3 60,033 + LRK53_RS18425 0.35 +0.1 60,033 + LRK53_RS18425 0.35 -1.1 60,033 + LRK53_RS18425 0.35 +0.1 60,034 - LRK53_RS18425 0.35 -0.7 60,034 - LRK53_RS18425 0.35 -1.3 60,034 - LRK53_RS18425 0.35 -0.1 60,034 - LRK53_RS18425 0.35 +0.4 60,034 - LRK53_RS18425 0.35 -1.0 60,034 - LRK53_RS18425 0.35 +1.9 60,034 - LRK53_RS18425 0.35 -0.7 60,034 - LRK53_RS18425 0.35 +0.4 60,034 - LRK53_RS18425 0.35 +0.3 60,034 - LRK53_RS18425 0.35 -1.3
Or see this region's nucleotide sequence