Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS17860 and LRK53_RS17865 are separated by 13 nucleotides LRK53_RS17865 and LRK53_RS17870 overlap by 31 nucleotides LRK53_RS17870 and LRK53_RS17875 are separated by 137 nucleotides
LRK53_RS17860: LRK53_RS17860 - peptidoglycan DD-metalloendopeptidase family protein, at 3,924,037 to 3,925,482
_RS17860
LRK53_RS17865: LRK53_RS17865 - anhydro-N-acetylmuramic acid kinase, at 3,925,496 to 3,926,626
_RS17865
LRK53_RS17870: LRK53_RS17870 - hypothetical protein, at 3,926,596 to 3,926,907
_RS17870
LRK53_RS17875: LRK53_RS17875 - MFS transporter, at 3,927,045 to 3,928,280
_RS17875
Position (kb)
3925
3926
3927 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3924.673 kb on + strand, within LRK53_RS17860 at 3924.794 kb on - strand, within LRK53_RS17860 at 3924.919 kb on + strand, within LRK53_RS17860 at 3925.054 kb on + strand, within LRK53_RS17860 at 3925.054 kb on + strand, within LRK53_RS17860 at 3925.108 kb on + strand, within LRK53_RS17860 at 3925.108 kb on + strand, within LRK53_RS17860 at 3925.108 kb on + strand, within LRK53_RS17860 at 3925.109 kb on - strand, within LRK53_RS17860 at 3925.109 kb on - strand, within LRK53_RS17860 at 3925.291 kb on + strand, within LRK53_RS17860 at 3925.517 kb on + strand at 3925.517 kb on + strand at 3925.517 kb on + strand at 3925.518 kb on - strand at 3926.198 kb on + strand, within LRK53_RS17865 at 3926.198 kb on + strand, within LRK53_RS17865 at 3926.198 kb on + strand, within LRK53_RS17865 at 3926.199 kb on - strand, within LRK53_RS17865 at 3926.199 kb on - strand, within LRK53_RS17865 at 3926.237 kb on + strand, within LRK53_RS17865 at 3926.397 kb on + strand, within LRK53_RS17865 at 3926.398 kb on - strand, within LRK53_RS17865 at 3926.597 kb on + strand at 3926.624 kb on + strand at 3926.625 kb on - strand at 3926.907 kb on + strand at 3926.907 kb on + strand at 3926.907 kb on + strand at 3926.908 kb on - strand at 3926.908 kb on - strand at 3926.908 kb on - strand at 3926.908 kb on - strand at 3927.046 kb on + strand at 3927.047 kb on - strand at 3927.155 kb on - strand at 3927.245 kb on - strand, within LRK53_RS17875 at 3927.388 kb on + strand, within LRK53_RS17875 at 3927.388 kb on + strand, within LRK53_RS17875 at 3927.389 kb on - strand, within LRK53_RS17875 at 3927.389 kb on - strand, within LRK53_RS17875 at 3927.389 kb on - strand, within LRK53_RS17875 at 3927.505 kb on + strand, within LRK53_RS17875 at 3927.505 kb on + strand, within LRK53_RS17875 at 3927.506 kb on - strand, within LRK53_RS17875
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 3,924,673 + LRK53_RS17860 0.44 +0.8 3,924,794 - LRK53_RS17860 0.52 +2.0 3,924,919 + LRK53_RS17860 0.61 +0.4 3,925,054 + LRK53_RS17860 0.70 -0.7 3,925,054 + LRK53_RS17860 0.70 +0.7 3,925,108 + LRK53_RS17860 0.74 +0.3 3,925,108 + LRK53_RS17860 0.74 -1.2 3,925,108 + LRK53_RS17860 0.74 +0.2 3,925,109 - LRK53_RS17860 0.74 -0.0 3,925,109 - LRK53_RS17860 0.74 -2.0 3,925,291 + LRK53_RS17860 0.87 +0.4 3,925,517 + -0.2 3,925,517 + +0.3 3,925,517 + -0.7 3,925,518 - -2.6 3,926,198 + LRK53_RS17865 0.62 -0.2 3,926,198 + LRK53_RS17865 0.62 -1.0 3,926,198 + LRK53_RS17865 0.62 -0.5 3,926,199 - LRK53_RS17865 0.62 -0.9 3,926,199 - LRK53_RS17865 0.62 -0.0 3,926,237 + LRK53_RS17865 0.66 +0.2 3,926,397 + LRK53_RS17865 0.80 -0.0 3,926,398 - LRK53_RS17865 0.80 +2.7 3,926,597 + -1.1 3,926,624 + +1.8 3,926,625 - -0.8 3,926,907 + -1.6 3,926,907 + -0.7 3,926,907 + -0.7 3,926,908 - -2.7 3,926,908 - -0.5 3,926,908 - +2.1 3,926,908 - -0.0 3,927,046 + +1.0 3,927,047 - -1.0 3,927,155 - -0.7 3,927,245 - LRK53_RS17875 0.16 -0.2 3,927,388 + LRK53_RS17875 0.28 +1.0 3,927,388 + LRK53_RS17875 0.28 +0.7 3,927,389 - LRK53_RS17875 0.28 -0.2 3,927,389 - LRK53_RS17875 0.28 +0.2 3,927,389 - LRK53_RS17875 0.28 -0.2 3,927,505 + LRK53_RS17875 0.37 +0.4 3,927,505 + LRK53_RS17875 0.37 +0.2 3,927,506 - LRK53_RS17875 0.37 -0.5
Or see this region's nucleotide sequence