Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS17865

Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS17860 and LRK53_RS17865 are separated by 13 nucleotidesLRK53_RS17865 and LRK53_RS17870 overlap by 31 nucleotidesLRK53_RS17870 and LRK53_RS17875 are separated by 137 nucleotides LRK53_RS17860: LRK53_RS17860 - peptidoglycan DD-metalloendopeptidase family protein, at 3,924,037 to 3,925,482 _RS17860 LRK53_RS17865: LRK53_RS17865 - anhydro-N-acetylmuramic acid kinase, at 3,925,496 to 3,926,626 _RS17865 LRK53_RS17870: LRK53_RS17870 - hypothetical protein, at 3,926,596 to 3,926,907 _RS17870 LRK53_RS17875: LRK53_RS17875 - MFS transporter, at 3,927,045 to 3,928,280 _RS17875 Position (kb) 3925 3926 3927Strain fitness (log2 ratio) -2 -1 0 1 2at 3924.673 kb on + strand, within LRK53_RS17860at 3924.794 kb on - strand, within LRK53_RS17860at 3924.919 kb on + strand, within LRK53_RS17860at 3925.054 kb on + strand, within LRK53_RS17860at 3925.054 kb on + strand, within LRK53_RS17860at 3925.108 kb on + strand, within LRK53_RS17860at 3925.108 kb on + strand, within LRK53_RS17860at 3925.108 kb on + strand, within LRK53_RS17860at 3925.109 kb on - strand, within LRK53_RS17860at 3925.109 kb on - strand, within LRK53_RS17860at 3925.291 kb on + strand, within LRK53_RS17860at 3925.517 kb on + strandat 3925.517 kb on + strandat 3925.517 kb on + strandat 3925.518 kb on - strandat 3926.198 kb on + strand, within LRK53_RS17865at 3926.198 kb on + strand, within LRK53_RS17865at 3926.198 kb on + strand, within LRK53_RS17865at 3926.199 kb on - strand, within LRK53_RS17865at 3926.199 kb on - strand, within LRK53_RS17865at 3926.237 kb on + strand, within LRK53_RS17865at 3926.397 kb on + strand, within LRK53_RS17865at 3926.398 kb on - strand, within LRK53_RS17865at 3926.597 kb on + strandat 3926.624 kb on + strandat 3926.625 kb on - strandat 3926.907 kb on + strandat 3926.907 kb on + strandat 3926.907 kb on + strandat 3926.908 kb on - strandat 3926.908 kb on - strandat 3926.908 kb on - strandat 3926.908 kb on - strandat 3927.046 kb on + strandat 3927.047 kb on - strandat 3927.155 kb on - strandat 3927.245 kb on - strand, within LRK53_RS17875at 3927.388 kb on + strand, within LRK53_RS17875at 3927.388 kb on + strand, within LRK53_RS17875at 3927.389 kb on - strand, within LRK53_RS17875at 3927.389 kb on - strand, within LRK53_RS17875at 3927.389 kb on - strand, within LRK53_RS17875at 3927.505 kb on + strand, within LRK53_RS17875at 3927.505 kb on + strand, within LRK53_RS17875at 3927.506 kb on - strand, within LRK53_RS17875

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM
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3,924,673 + LRK53_RS17860 0.44 +0.8
3,924,794 - LRK53_RS17860 0.52 +2.0
3,924,919 + LRK53_RS17860 0.61 +0.4
3,925,054 + LRK53_RS17860 0.70 -0.7
3,925,054 + LRK53_RS17860 0.70 +0.7
3,925,108 + LRK53_RS17860 0.74 +0.3
3,925,108 + LRK53_RS17860 0.74 -1.2
3,925,108 + LRK53_RS17860 0.74 +0.2
3,925,109 - LRK53_RS17860 0.74 -0.0
3,925,109 - LRK53_RS17860 0.74 -2.0
3,925,291 + LRK53_RS17860 0.87 +0.4
3,925,517 + -0.2
3,925,517 + +0.3
3,925,517 + -0.7
3,925,518 - -2.6
3,926,198 + LRK53_RS17865 0.62 -0.2
3,926,198 + LRK53_RS17865 0.62 -1.0
3,926,198 + LRK53_RS17865 0.62 -0.5
3,926,199 - LRK53_RS17865 0.62 -0.9
3,926,199 - LRK53_RS17865 0.62 -0.0
3,926,237 + LRK53_RS17865 0.66 +0.2
3,926,397 + LRK53_RS17865 0.80 -0.0
3,926,398 - LRK53_RS17865 0.80 +2.7
3,926,597 + -1.1
3,926,624 + +1.8
3,926,625 - -0.8
3,926,907 + -1.6
3,926,907 + -0.7
3,926,907 + -0.7
3,926,908 - -2.7
3,926,908 - -0.5
3,926,908 - +2.1
3,926,908 - -0.0
3,927,046 + +1.0
3,927,047 - -1.0
3,927,155 - -0.7
3,927,245 - LRK53_RS17875 0.16 -0.2
3,927,388 + LRK53_RS17875 0.28 +1.0
3,927,388 + LRK53_RS17875 0.28 +0.7
3,927,389 - LRK53_RS17875 0.28 -0.2
3,927,389 - LRK53_RS17875 0.28 +0.2
3,927,389 - LRK53_RS17875 0.28 -0.2
3,927,505 + LRK53_RS17875 0.37 +0.4
3,927,505 + LRK53_RS17875 0.37 +0.2
3,927,506 - LRK53_RS17875 0.37 -0.5

Or see this region's nucleotide sequence