Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS14640

Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS14630 and LRK53_RS14635 overlap by 23 nucleotidesLRK53_RS14635 and LRK53_RS14640 are separated by 1 nucleotidesLRK53_RS14640 and LRK53_RS14645 overlap by 4 nucleotides LRK53_RS14630: LRK53_RS14630 - molybdenum cofactor guanylyltransferase, at 3,206,486 to 3,207,070 _RS14630 LRK53_RS14635: LRK53_RS14635 - molybdenum cofactor biosynthesis protein MoaE, at 3,207,048 to 3,207,548 _RS14635 LRK53_RS14640: LRK53_RS14640 - MoaD/ThiS family protein, at 3,207,550 to 3,207,810 _RS14640 LRK53_RS14645: LRK53_RS14645 - molybdopterin molybdotransferase MoeA, at 3,207,807 to 3,209,060 _RS14645 Position (kb) 3207 3208Strain fitness (log2 ratio) -2 -1 0 1 2at 3206.708 kb on + strand, within LRK53_RS14630at 3206.708 kb on + strand, within LRK53_RS14630at 3206.708 kb on + strand, within LRK53_RS14630at 3206.708 kb on + strand, within LRK53_RS14630at 3206.708 kb on + strand, within LRK53_RS14630at 3206.709 kb on - strand, within LRK53_RS14630at 3206.709 kb on - strand, within LRK53_RS14630at 3206.787 kb on - strand, within LRK53_RS14630at 3206.787 kb on - strand, within LRK53_RS14630at 3206.787 kb on - strand, within LRK53_RS14630at 3206.793 kb on + strand, within LRK53_RS14630at 3206.793 kb on + strand, within LRK53_RS14630at 3206.793 kb on + strand, within LRK53_RS14630at 3206.793 kb on + strand, within LRK53_RS14630at 3206.793 kb on + strand, within LRK53_RS14630at 3206.793 kb on + strand, within LRK53_RS14630at 3206.793 kb on + strand, within LRK53_RS14630at 3206.793 kb on + strand, within LRK53_RS14630at 3206.793 kb on + strand, within LRK53_RS14630at 3206.793 kb on + strand, within LRK53_RS14630at 3206.793 kb on + strand, within LRK53_RS14630at 3206.794 kb on - strand, within LRK53_RS14630at 3206.794 kb on - strand, within LRK53_RS14630at 3206.794 kb on - strand, within LRK53_RS14630at 3206.794 kb on - strand, within LRK53_RS14630at 3206.794 kb on - strand, within LRK53_RS14630at 3206.794 kb on - strand, within LRK53_RS14630at 3206.794 kb on - strand, within LRK53_RS14630at 3206.794 kb on - strand, within LRK53_RS14630at 3206.794 kb on - strand, within LRK53_RS14630at 3206.794 kb on - strand, within LRK53_RS14630at 3206.794 kb on - strand, within LRK53_RS14630at 3206.794 kb on - strand, within LRK53_RS14630at 3206.794 kb on - strand, within LRK53_RS14630at 3206.794 kb on - strand, within LRK53_RS14630at 3207.090 kb on - strandat 3207.090 kb on - strandat 3207.151 kb on + strand, within LRK53_RS14635at 3207.151 kb on + strand, within LRK53_RS14635at 3207.151 kb on + strand, within LRK53_RS14635at 3207.151 kb on + strand, within LRK53_RS14635at 3207.151 kb on + strand, within LRK53_RS14635at 3207.151 kb on + strand, within LRK53_RS14635at 3207.151 kb on + strand, within LRK53_RS14635at 3207.152 kb on - strand, within LRK53_RS14635at 3207.152 kb on - strand, within LRK53_RS14635at 3207.152 kb on - strand, within LRK53_RS14635at 3207.152 kb on - strand, within LRK53_RS14635at 3207.152 kb on - strand, within LRK53_RS14635at 3207.152 kb on - strand, within LRK53_RS14635at 3207.152 kb on - strand, within LRK53_RS14635at 3207.301 kb on + strand, within LRK53_RS14635at 3207.301 kb on + strand, within LRK53_RS14635at 3207.301 kb on + strand, within LRK53_RS14635at 3207.301 kb on + strand, within LRK53_RS14635at 3207.301 kb on + strand, within LRK53_RS14635at 3207.301 kb on + strand, within LRK53_RS14635at 3207.302 kb on - strand, within LRK53_RS14635at 3207.302 kb on - strand, within LRK53_RS14635at 3207.302 kb on - strand, within LRK53_RS14635at 3207.302 kb on - strand, within LRK53_RS14635at 3207.302 kb on - strand, within LRK53_RS14635at 3207.302 kb on - strand, within LRK53_RS14635at 3207.302 kb on - strand, within LRK53_RS14635at 3207.302 kb on - strand, within LRK53_RS14635at 3207.302 kb on - strand, within LRK53_RS14635at 3207.302 kb on - strand, within LRK53_RS14635at 3207.388 kb on + strand, within LRK53_RS14635at 3207.388 kb on + strand, within LRK53_RS14635at 3207.388 kb on + strand, within LRK53_RS14635at 3207.770 kb on + strand, within LRK53_RS14640at 3207.770 kb on + strand, within LRK53_RS14640at 3207.853 kb on + strandat 3207.853 kb on + strandat 3207.854 kb on - strandat 3207.854 kb on - strandat 3208.394 kb on - strand, within LRK53_RS14645at 3208.394 kb on - strand, within LRK53_RS14645at 3208.679 kb on + strand, within LRK53_RS14645

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM
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3,206,708 + LRK53_RS14630 0.38 +0.9
3,206,708 + LRK53_RS14630 0.38 -2.0
3,206,708 + LRK53_RS14630 0.38 -1.0
3,206,708 + LRK53_RS14630 0.38 -1.0
3,206,708 + LRK53_RS14630 0.38 +0.5
3,206,709 - LRK53_RS14630 0.38 +0.4
3,206,709 - LRK53_RS14630 0.38 +0.1
3,206,787 - LRK53_RS14630 0.51 -0.9
3,206,787 - LRK53_RS14630 0.51 -1.6
3,206,787 - LRK53_RS14630 0.51 -0.0
3,206,793 + LRK53_RS14630 0.52 +0.2
3,206,793 + LRK53_RS14630 0.52 +0.6
3,206,793 + LRK53_RS14630 0.52 -0.6
3,206,793 + LRK53_RS14630 0.52 +0.4
3,206,793 + LRK53_RS14630 0.52 -2.2
3,206,793 + LRK53_RS14630 0.52 -2.2
3,206,793 + LRK53_RS14630 0.52 -0.5
3,206,793 + LRK53_RS14630 0.52 -0.7
3,206,793 + LRK53_RS14630 0.52 +0.1
3,206,793 + LRK53_RS14630 0.52 +1.4
3,206,793 + LRK53_RS14630 0.52 -1.1
3,206,794 - LRK53_RS14630 0.53 +2.1
3,206,794 - LRK53_RS14630 0.53 -1.8
3,206,794 - LRK53_RS14630 0.53 -1.1
3,206,794 - LRK53_RS14630 0.53 +0.1
3,206,794 - LRK53_RS14630 0.53 -1.2
3,206,794 - LRK53_RS14630 0.53 -2.4
3,206,794 - LRK53_RS14630 0.53 -0.7
3,206,794 - LRK53_RS14630 0.53 +0.6
3,206,794 - LRK53_RS14630 0.53 -0.1
3,206,794 - LRK53_RS14630 0.53 -0.2
3,206,794 - LRK53_RS14630 0.53 +1.3
3,206,794 - LRK53_RS14630 0.53 +1.1
3,206,794 - LRK53_RS14630 0.53 +0.5
3,206,794 - LRK53_RS14630 0.53 +0.1
3,207,090 - -0.3
3,207,090 - +1.9
3,207,151 + LRK53_RS14635 0.21 -0.3
3,207,151 + LRK53_RS14635 0.21 +0.3
3,207,151 + LRK53_RS14635 0.21 -0.3
3,207,151 + LRK53_RS14635 0.21 +0.7
3,207,151 + LRK53_RS14635 0.21 -1.3
3,207,151 + LRK53_RS14635 0.21 -0.6
3,207,151 + LRK53_RS14635 0.21 +0.3
3,207,152 - LRK53_RS14635 0.21 +1.3
3,207,152 - LRK53_RS14635 0.21 -0.3
3,207,152 - LRK53_RS14635 0.21 -0.5
3,207,152 - LRK53_RS14635 0.21 -0.8
3,207,152 - LRK53_RS14635 0.21 -0.9
3,207,152 - LRK53_RS14635 0.21 -1.3
3,207,152 - LRK53_RS14635 0.21 -0.3
3,207,301 + LRK53_RS14635 0.50 -0.5
3,207,301 + LRK53_RS14635 0.50 -0.0
3,207,301 + LRK53_RS14635 0.50 -1.5
3,207,301 + LRK53_RS14635 0.50 +1.1
3,207,301 + LRK53_RS14635 0.50 +0.1
3,207,301 + LRK53_RS14635 0.50 +0.4
3,207,302 - LRK53_RS14635 0.51 -1.5
3,207,302 - LRK53_RS14635 0.51 -2.4
3,207,302 - LRK53_RS14635 0.51 -1.0
3,207,302 - LRK53_RS14635 0.51 -0.7
3,207,302 - LRK53_RS14635 0.51 -2.4
3,207,302 - LRK53_RS14635 0.51 -1.9
3,207,302 - LRK53_RS14635 0.51 -1.8
3,207,302 - LRK53_RS14635 0.51 +0.7
3,207,302 - LRK53_RS14635 0.51 -1.1
3,207,302 - LRK53_RS14635 0.51 -0.1
3,207,388 + LRK53_RS14635 0.68 +1.0
3,207,388 + LRK53_RS14635 0.68 +0.5
3,207,388 + LRK53_RS14635 0.68 +0.4
3,207,770 + LRK53_RS14640 0.84 -1.3
3,207,770 + LRK53_RS14640 0.84 -0.7
3,207,853 + -0.9
3,207,853 + -1.7
3,207,854 - +2.3
3,207,854 - -2.7
3,208,394 - LRK53_RS14645 0.47 -0.2
3,208,394 - LRK53_RS14645 0.47 -1.6
3,208,679 + LRK53_RS14645 0.70 -1.4

Or see this region's nucleotide sequence