Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08845 and LRK53_RS08850 are separated by 17 nucleotides LRK53_RS08850 and LRK53_RS08855 are separated by 54 nucleotides LRK53_RS08855 and LRK53_RS08860 are separated by 11 nucleotides LRK53_RS08860 and LRK53_RS08865 are separated by 182 nucleotides
LRK53_RS08845: LRK53_RS08845 - DUF58 domain-containing protein, at 1,985,454 to 1,986,407
_RS08845
LRK53_RS08850: LRK53_RS08850 - AAA family ATPase, at 1,986,425 to 1,986,763
_RS08850
LRK53_RS08855: LRK53_RS08855 - Maf family nucleotide pyrophosphatase, at 1,986,818 to 1,987,396
_RS08855
LRK53_RS08860: LRK53_RS08860 - hypothetical protein, at 1,987,408 to 1,987,863
_RS08860
LRK53_RS08865: LRK53_RS08865 - YceD family protein, at 1,988,046 to 1,988,519
_RS08865
Position (kb) 1986
1987
1988 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1986.223 kb on + strand, within LRK53_RS08845 at 1986.223 kb on + strand, within LRK53_RS08845 at 1986.224 kb on - strand, within LRK53_RS08845 at 1986.293 kb on + strand, within LRK53_RS08845 at 1986.293 kb on + strand, within LRK53_RS08845 at 1986.293 kb on + strand, within LRK53_RS08845 at 1986.294 kb on - strand, within LRK53_RS08845 at 1986.294 kb on - strand, within LRK53_RS08845 at 1986.294 kb on - strand, within LRK53_RS08845 at 1986.294 kb on - strand, within LRK53_RS08845 at 1986.294 kb on - strand, within LRK53_RS08845 at 1986.294 kb on - strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.295 kb on + strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.296 kb on - strand, within LRK53_RS08845 at 1986.299 kb on + strand, within LRK53_RS08845 at 1986.299 kb on + strand, within LRK53_RS08845 at 1986.299 kb on + strand, within LRK53_RS08845 at 1986.299 kb on + strand, within LRK53_RS08845 at 1986.299 kb on + strand, within LRK53_RS08845 at 1986.299 kb on + strand, within LRK53_RS08845 at 1986.300 kb on - strand, within LRK53_RS08845 at 1986.300 kb on - strand, within LRK53_RS08845 at 1986.300 kb on - strand, within LRK53_RS08845 at 1986.300 kb on - strand, within LRK53_RS08845 at 1986.300 kb on - strand, within LRK53_RS08845 at 1986.300 kb on - strand, within LRK53_RS08845 at 1986.300 kb on - strand, within LRK53_RS08845 at 1986.300 kb on - strand, within LRK53_RS08845 at 1986.300 kb on - strand, within LRK53_RS08845 at 1986.300 kb on - strand, within LRK53_RS08845 at 1986.300 kb on - strand, within LRK53_RS08845 at 1986.300 kb on - strand, within LRK53_RS08845 at 1986.300 kb on - strand, within LRK53_RS08845 at 1986.300 kb on - strand, within LRK53_RS08845 at 1986.300 kb on - strand, within LRK53_RS08845 at 1986.300 kb on - strand, within LRK53_RS08845 at 1986.489 kb on + strand, within LRK53_RS08850 at 1986.489 kb on + strand, within LRK53_RS08850 at 1986.489 kb on + strand, within LRK53_RS08850 at 1986.489 kb on + strand, within LRK53_RS08850 at 1986.489 kb on + strand, within LRK53_RS08850 at 1986.489 kb on + strand, within LRK53_RS08850 at 1986.489 kb on + strand, within LRK53_RS08850 at 1986.489 kb on + strand, within LRK53_RS08850 at 1986.490 kb on - strand, within LRK53_RS08850 at 1986.490 kb on - strand, within LRK53_RS08850 at 1986.490 kb on - strand, within LRK53_RS08850 at 1986.490 kb on - strand, within LRK53_RS08850 at 1986.490 kb on - strand, within LRK53_RS08850 at 1986.490 kb on - strand, within LRK53_RS08850 at 1986.490 kb on - strand, within LRK53_RS08850 at 1986.490 kb on - strand, within LRK53_RS08850 at 1986.490 kb on - strand, within LRK53_RS08850 at 1986.676 kb on + strand, within LRK53_RS08850 at 1986.807 kb on + strand at 1986.807 kb on + strand at 1986.808 kb on - strand at 1986.808 kb on - strand at 1986.808 kb on - strand at 1986.808 kb on - strand at 1986.984 kb on + strand, within LRK53_RS08855 at 1986.985 kb on - strand, within LRK53_RS08855 at 1987.030 kb on + strand, within LRK53_RS08855 at 1987.031 kb on - strand, within LRK53_RS08855 at 1987.046 kb on - strand, within LRK53_RS08855 at 1987.046 kb on - strand, within LRK53_RS08855 at 1987.394 kb on + strand at 1987.394 kb on + strand at 1987.394 kb on + strand at 1987.394 kb on + strand at 1987.394 kb on + strand at 1987.394 kb on + strand at 1987.394 kb on + strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.395 kb on - strand at 1987.853 kb on + strand at 1987.853 kb on + strand at 1987.853 kb on + strand at 1987.854 kb on - strand at 1987.854 kb on - strand at 1987.854 kb on - strand at 1988.006 kb on + strand at 1988.006 kb on + strand at 1988.006 kb on + strand at 1988.006 kb on + strand at 1988.006 kb on + strand at 1988.006 kb on + strand at 1988.006 kb on + strand at 1988.006 kb on + strand at 1988.006 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 1,986,223 + LRK53_RS08845 0.81 +1.0 1,986,223 + LRK53_RS08845 0.81 +1.7 1,986,224 - LRK53_RS08845 0.81 -0.3 1,986,293 + LRK53_RS08845 0.88 +0.4 1,986,293 + LRK53_RS08845 0.88 +1.1 1,986,293 + LRK53_RS08845 0.88 -1.2 1,986,294 - LRK53_RS08845 0.88 -0.3 1,986,294 - LRK53_RS08845 0.88 +0.1 1,986,294 - LRK53_RS08845 0.88 -1.9 1,986,294 - LRK53_RS08845 0.88 -0.1 1,986,294 - LRK53_RS08845 0.88 -0.4 1,986,294 - LRK53_RS08845 0.88 +0.9 1,986,295 + LRK53_RS08845 0.88 -0.8 1,986,295 + LRK53_RS08845 0.88 -0.0 1,986,295 + LRK53_RS08845 0.88 +0.1 1,986,295 + LRK53_RS08845 0.88 -1.3 1,986,295 + LRK53_RS08845 0.88 -2.3 1,986,295 + LRK53_RS08845 0.88 -0.4 1,986,295 + LRK53_RS08845 0.88 +1.5 1,986,295 + LRK53_RS08845 0.88 -0.6 1,986,295 + LRK53_RS08845 0.88 +0.3 1,986,295 + LRK53_RS08845 0.88 +1.1 1,986,295 + LRK53_RS08845 0.88 -0.6 1,986,295 + LRK53_RS08845 0.88 -0.5 1,986,295 + LRK53_RS08845 0.88 -1.3 1,986,295 + LRK53_RS08845 0.88 -1.3 1,986,295 + LRK53_RS08845 0.88 -3.0 1,986,295 + LRK53_RS08845 0.88 -0.9 1,986,295 + LRK53_RS08845 0.88 -1.4 1,986,295 + LRK53_RS08845 0.88 +0.5 1,986,295 + LRK53_RS08845 0.88 +1.8 1,986,295 + LRK53_RS08845 0.88 -0.3 1,986,295 + LRK53_RS08845 0.88 -1.9 1,986,295 + LRK53_RS08845 0.88 -1.9 1,986,295 + LRK53_RS08845 0.88 -2.0 1,986,295 + LRK53_RS08845 0.88 +1.1 1,986,295 + LRK53_RS08845 0.88 +0.2 1,986,295 + LRK53_RS08845 0.88 -0.5 1,986,295 + LRK53_RS08845 0.88 -0.9 1,986,295 + LRK53_RS08845 0.88 +1.1 1,986,295 + LRK53_RS08845 0.88 -0.3 1,986,295 + LRK53_RS08845 0.88 +0.9 1,986,295 + LRK53_RS08845 0.88 -2.7 1,986,295 + LRK53_RS08845 0.88 -1.0 1,986,295 + LRK53_RS08845 0.88 -1.9 1,986,295 + LRK53_RS08845 0.88 -0.6 1,986,295 + LRK53_RS08845 0.88 -0.1 1,986,296 - LRK53_RS08845 0.88 +0.1 1,986,296 - LRK53_RS08845 0.88 -0.2 1,986,296 - LRK53_RS08845 0.88 -0.3 1,986,296 - LRK53_RS08845 0.88 -0.6 1,986,296 - LRK53_RS08845 0.88 +0.7 1,986,296 - LRK53_RS08845 0.88 +1.4 1,986,296 - LRK53_RS08845 0.88 -1.3 1,986,296 - LRK53_RS08845 0.88 -2.0 1,986,296 - LRK53_RS08845 0.88 -1.0 1,986,296 - LRK53_RS08845 0.88 -0.2 1,986,296 - LRK53_RS08845 0.88 +0.3 1,986,296 - LRK53_RS08845 0.88 +0.7 1,986,296 - LRK53_RS08845 0.88 -2.4 1,986,296 - LRK53_RS08845 0.88 -0.8 1,986,296 - LRK53_RS08845 0.88 -0.3 1,986,296 - LRK53_RS08845 0.88 -0.9 1,986,296 - LRK53_RS08845 0.88 -0.9 1,986,296 - LRK53_RS08845 0.88 -0.9 1,986,296 - LRK53_RS08845 0.88 +0.2 1,986,296 - LRK53_RS08845 0.88 -0.6 1,986,296 - LRK53_RS08845 0.88 -1.4 1,986,296 - LRK53_RS08845 0.88 -0.2 1,986,296 - LRK53_RS08845 0.88 -1.3 1,986,296 - LRK53_RS08845 0.88 -0.3 1,986,296 - LRK53_RS08845 0.88 +0.7 1,986,296 - LRK53_RS08845 0.88 -0.4 1,986,296 - LRK53_RS08845 0.88 -0.6 1,986,296 - LRK53_RS08845 0.88 +1.2 1,986,296 - LRK53_RS08845 0.88 -1.3 1,986,296 - LRK53_RS08845 0.88 +0.7 1,986,296 - LRK53_RS08845 0.88 -1.3 1,986,296 - LRK53_RS08845 0.88 -1.9 1,986,296 - LRK53_RS08845 0.88 +0.3 1,986,296 - LRK53_RS08845 0.88 +1.4 1,986,296 - LRK53_RS08845 0.88 -1.5 1,986,296 - LRK53_RS08845 0.88 +0.2 1,986,296 - LRK53_RS08845 0.88 -0.3 1,986,296 - LRK53_RS08845 0.88 -0.8 1,986,299 + LRK53_RS08845 0.89 -2.3 1,986,299 + LRK53_RS08845 0.89 +0.5 1,986,299 + LRK53_RS08845 0.89 -0.5 1,986,299 + LRK53_RS08845 0.89 -1.0 1,986,299 + LRK53_RS08845 0.89 -1.3 1,986,299 + LRK53_RS08845 0.89 +1.7 1,986,300 - LRK53_RS08845 0.89 -1.5 1,986,300 - LRK53_RS08845 0.89 -0.8 1,986,300 - LRK53_RS08845 0.89 -0.2 1,986,300 - LRK53_RS08845 0.89 +0.2 1,986,300 - LRK53_RS08845 0.89 -1.5 1,986,300 - LRK53_RS08845 0.89 -1.6 1,986,300 - LRK53_RS08845 0.89 -0.5 1,986,300 - LRK53_RS08845 0.89 +0.5 1,986,300 - LRK53_RS08845 0.89 +0.3 1,986,300 - LRK53_RS08845 0.89 -0.2 1,986,300 - LRK53_RS08845 0.89 -1.5 1,986,300 - LRK53_RS08845 0.89 -3.8 1,986,300 - LRK53_RS08845 0.89 +0.7 1,986,300 - LRK53_RS08845 0.89 -4.8 1,986,300 - LRK53_RS08845 0.89 -0.2 1,986,300 - LRK53_RS08845 0.89 -1.8 1,986,489 + LRK53_RS08850 0.19 -2.5 1,986,489 + LRK53_RS08850 0.19 -1.3 1,986,489 + LRK53_RS08850 0.19 -1.1 1,986,489 + LRK53_RS08850 0.19 -1.3 1,986,489 + LRK53_RS08850 0.19 +0.7 1,986,489 + LRK53_RS08850 0.19 +1.3 1,986,489 + LRK53_RS08850 0.19 -0.2 1,986,489 + LRK53_RS08850 0.19 -2.6 1,986,490 - LRK53_RS08850 0.19 +0.1 1,986,490 - LRK53_RS08850 0.19 +0.4 1,986,490 - LRK53_RS08850 0.19 -1.2 1,986,490 - LRK53_RS08850 0.19 +0.8 1,986,490 - LRK53_RS08850 0.19 -1.6 1,986,490 - LRK53_RS08850 0.19 -0.4 1,986,490 - LRK53_RS08850 0.19 -0.4 1,986,490 - LRK53_RS08850 0.19 -2.9 1,986,490 - LRK53_RS08850 0.19 +0.6 1,986,676 + LRK53_RS08850 0.74 -0.5 1,986,807 + -0.9 1,986,807 + -1.5 1,986,808 - -0.4 1,986,808 - -2.3 1,986,808 - +0.2 1,986,808 - -0.8 1,986,984 + LRK53_RS08855 0.29 -1.8 1,986,985 - LRK53_RS08855 0.29 -0.5 1,987,030 + LRK53_RS08855 0.37 -0.8 1,987,031 - LRK53_RS08855 0.37 -0.3 1,987,046 - LRK53_RS08855 0.39 -0.5 1,987,046 - LRK53_RS08855 0.39 -1.9 1,987,394 + -1.5 1,987,394 + -0.5 1,987,394 + -0.1 1,987,394 + +0.2 1,987,394 + -0.6 1,987,394 + -2.2 1,987,394 + -1.9 1,987,395 - +0.6 1,987,395 - +0.1 1,987,395 - -0.8 1,987,395 - -2.1 1,987,395 - +0.4 1,987,395 - +1.2 1,987,395 - +0.5 1,987,395 - -0.0 1,987,395 - +0.3 1,987,395 - -1.1 1,987,395 - -1.2 1,987,395 - +1.7 1,987,395 - -1.8 1,987,395 - -1.0 1,987,395 - -0.9 1,987,395 - -2.5 1,987,395 - -1.2 1,987,395 - -1.5 1,987,395 - +1.4 1,987,395 - +0.8 1,987,853 + -2.2 1,987,853 + -0.1 1,987,853 + +1.4 1,987,854 - -1.2 1,987,854 - -0.3 1,987,854 - +1.2 1,988,006 + +0.7 1,988,006 + -0.9 1,988,006 + +0.7 1,988,006 + +0.5 1,988,006 + -0.1 1,988,006 + -0.5 1,988,006 + +0.4 1,988,006 + -1.5 1,988,006 + -2.2
Or see this region's nucleotide sequence