Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08465 and LRK53_RS08470 overlap by 4 nucleotides LRK53_RS08470 and LRK53_RS08475 overlap by 4 nucleotides LRK53_RS08475 and LRK53_RS08480 are separated by 142 nucleotides
LRK53_RS08465: LRK53_RS08465 - histidinol-phosphate transaminase, at 1,902,022 to 1,903,098
_RS08465
LRK53_RS08470: LRK53_RS08470 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 1,903,095 to 1,904,162
_RS08470
LRK53_RS08475: LRK53_RS08475 - imidazole glycerol phosphate synthase subunit HisH, at 1,904,159 to 1,904,752
_RS08475
LRK53_RS08480: LRK53_RS08480 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 1,904,895 to 1,905,626
_RS08480
Position (kb) 1903
1904
1905 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1902.220 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.346 kb on + strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.347 kb on - strand, within LRK53_RS08465 at 1902.571 kb on + strand, within LRK53_RS08465 at 1902.571 kb on + strand, within LRK53_RS08465 at 1902.571 kb on + strand, within LRK53_RS08465 at 1902.571 kb on + strand, within LRK53_RS08465 at 1902.571 kb on + strand, within LRK53_RS08465 at 1902.571 kb on + strand, within LRK53_RS08465 at 1902.571 kb on + strand, within LRK53_RS08465 at 1902.571 kb on + strand, within LRK53_RS08465 at 1902.571 kb on + strand, within LRK53_RS08465 at 1902.571 kb on + strand, within LRK53_RS08465 at 1902.571 kb on + strand, within LRK53_RS08465 at 1902.572 kb on - strand, within LRK53_RS08465 at 1902.572 kb on - strand, within LRK53_RS08465 at 1902.572 kb on - strand, within LRK53_RS08465 at 1902.572 kb on - strand, within LRK53_RS08465 at 1902.572 kb on - strand, within LRK53_RS08465 at 1902.638 kb on + strand, within LRK53_RS08465 at 1902.638 kb on + strand, within LRK53_RS08465 at 1902.638 kb on + strand, within LRK53_RS08465 at 1902.639 kb on - strand, within LRK53_RS08465 at 1902.639 kb on - strand, within LRK53_RS08465 at 1902.639 kb on - strand, within LRK53_RS08465 at 1902.639 kb on - strand, within LRK53_RS08465 at 1903.061 kb on + strand at 1903.061 kb on + strand at 1903.061 kb on + strand at 1903.062 kb on - strand at 1903.062 kb on - strand at 1903.062 kb on - strand at 1903.062 kb on - strand at 1903.062 kb on - strand at 1903.173 kb on + strand at 1903.173 kb on + strand at 1903.173 kb on + strand at 1903.174 kb on - strand at 1903.174 kb on - strand at 1903.183 kb on + strand at 1903.183 kb on + strand at 1903.183 kb on + strand at 1903.183 kb on + strand at 1903.184 kb on - strand at 1903.184 kb on - strand at 1903.184 kb on - strand at 1903.434 kb on + strand, within LRK53_RS08470 at 1903.435 kb on - strand, within LRK53_RS08470 at 1903.435 kb on - strand, within LRK53_RS08470 at 1903.435 kb on - strand, within LRK53_RS08470 at 1903.435 kb on - strand, within LRK53_RS08470 at 1903.926 kb on + strand, within LRK53_RS08470 at 1903.926 kb on + strand, within LRK53_RS08470 at 1903.927 kb on - strand, within LRK53_RS08470 at 1904.100 kb on - strand at 1904.100 kb on - strand at 1904.213 kb on + strand at 1904.214 kb on - strand at 1904.579 kb on + strand, within LRK53_RS08475 at 1904.579 kb on + strand, within LRK53_RS08475 at 1904.579 kb on + strand, within LRK53_RS08475 at 1904.579 kb on + strand, within LRK53_RS08475 at 1904.580 kb on - strand, within LRK53_RS08475 at 1904.580 kb on - strand, within LRK53_RS08475 at 1904.580 kb on - strand, within LRK53_RS08475 at 1904.580 kb on - strand, within LRK53_RS08475 at 1904.594 kb on + strand, within LRK53_RS08475 at 1904.594 kb on + strand, within LRK53_RS08475 at 1904.594 kb on + strand, within LRK53_RS08475 at 1904.594 kb on + strand, within LRK53_RS08475 at 1904.594 kb on + strand, within LRK53_RS08475 at 1904.594 kb on + strand, within LRK53_RS08475 at 1904.594 kb on + strand, within LRK53_RS08475 at 1904.594 kb on + strand, within LRK53_RS08475 at 1904.594 kb on + strand, within LRK53_RS08475 at 1904.594 kb on + strand, within LRK53_RS08475 at 1904.595 kb on - strand, within LRK53_RS08475 at 1904.595 kb on - strand, within LRK53_RS08475 at 1904.595 kb on - strand, within LRK53_RS08475 at 1904.595 kb on - strand, within LRK53_RS08475 at 1904.595 kb on - strand, within LRK53_RS08475 at 1904.595 kb on - strand, within LRK53_RS08475 at 1904.595 kb on - strand, within LRK53_RS08475 at 1904.595 kb on - strand, within LRK53_RS08475 at 1904.601 kb on + strand, within LRK53_RS08475 at 1904.748 kb on + strand at 1904.748 kb on + strand at 1904.748 kb on + strand at 1904.749 kb on - strand at 1904.749 kb on - strand at 1904.749 kb on - strand at 1904.749 kb on - strand at 1904.749 kb on - strand at 1904.754 kb on + strand at 1904.754 kb on + strand at 1904.754 kb on + strand at 1904.754 kb on + strand at 1904.754 kb on + strand at 1904.754 kb on + strand at 1904.754 kb on + strand at 1904.754 kb on + strand at 1904.754 kb on + strand at 1904.754 kb on + strand at 1904.754 kb on + strand at 1904.754 kb on + strand at 1904.754 kb on + strand at 1904.754 kb on + strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.755 kb on - strand at 1904.822 kb on + strand at 1904.822 kb on + strand at 1904.822 kb on + strand at 1904.822 kb on + strand at 1904.823 kb on - strand at 1904.823 kb on - strand at 1904.823 kb on - strand at 1904.901 kb on + strand at 1904.901 kb on + strand at 1904.901 kb on + strand at 1904.901 kb on + strand at 1904.901 kb on + strand at 1904.901 kb on + strand at 1904.902 kb on - strand at 1904.902 kb on - strand at 1904.902 kb on - strand at 1904.902 kb on - strand at 1904.902 kb on - strand at 1904.911 kb on + strand at 1904.911 kb on + strand at 1904.911 kb on + strand at 1904.911 kb on + strand at 1904.967 kb on + strand at 1904.985 kb on + strand, within LRK53_RS08480 at 1904.985 kb on + strand, within LRK53_RS08480 at 1904.985 kb on + strand, within LRK53_RS08480 at 1904.985 kb on + strand, within LRK53_RS08480 at 1904.986 kb on - strand, within LRK53_RS08480 at 1904.986 kb on - strand, within LRK53_RS08480 at 1904.986 kb on - strand, within LRK53_RS08480 at 1905.018 kb on + strand, within LRK53_RS08480 at 1905.018 kb on + strand, within LRK53_RS08480 at 1905.019 kb on - strand, within LRK53_RS08480 at 1905.148 kb on + strand, within LRK53_RS08480
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 1,902,220 + LRK53_RS08465 0.18 +1.0 1,902,346 + LRK53_RS08465 0.30 -0.5 1,902,346 + LRK53_RS08465 0.30 +0.1 1,902,346 + LRK53_RS08465 0.30 -1.7 1,902,346 + LRK53_RS08465 0.30 -0.7 1,902,346 + LRK53_RS08465 0.30 +0.2 1,902,346 + LRK53_RS08465 0.30 -1.1 1,902,346 + LRK53_RS08465 0.30 -1.4 1,902,346 + LRK53_RS08465 0.30 -2.8 1,902,346 + LRK53_RS08465 0.30 -0.1 1,902,346 + LRK53_RS08465 0.30 -1.7 1,902,346 + LRK53_RS08465 0.30 -0.1 1,902,346 + LRK53_RS08465 0.30 +0.1 1,902,346 + LRK53_RS08465 0.30 -0.7 1,902,346 + LRK53_RS08465 0.30 -0.6 1,902,346 + LRK53_RS08465 0.30 -0.3 1,902,346 + LRK53_RS08465 0.30 +0.4 1,902,346 + LRK53_RS08465 0.30 -0.1 1,902,346 + LRK53_RS08465 0.30 -0.2 1,902,346 + LRK53_RS08465 0.30 +1.9 1,902,346 + LRK53_RS08465 0.30 -1.0 1,902,346 + LRK53_RS08465 0.30 +0.3 1,902,346 + LRK53_RS08465 0.30 -1.2 1,902,346 + LRK53_RS08465 0.30 -0.7 1,902,346 + LRK53_RS08465 0.30 -1.6 1,902,346 + LRK53_RS08465 0.30 +2.9 1,902,346 + LRK53_RS08465 0.30 -2.1 1,902,346 + LRK53_RS08465 0.30 +0.3 1,902,346 + LRK53_RS08465 0.30 -1.2 1,902,346 + LRK53_RS08465 0.30 -0.6 1,902,347 - LRK53_RS08465 0.30 +1.3 1,902,347 - LRK53_RS08465 0.30 +0.1 1,902,347 - LRK53_RS08465 0.30 -3.2 1,902,347 - LRK53_RS08465 0.30 -1.1 1,902,347 - LRK53_RS08465 0.30 -2.3 1,902,347 - LRK53_RS08465 0.30 -0.2 1,902,347 - LRK53_RS08465 0.30 +0.3 1,902,347 - LRK53_RS08465 0.30 +0.2 1,902,347 - LRK53_RS08465 0.30 -1.6 1,902,347 - LRK53_RS08465 0.30 +1.0 1,902,347 - LRK53_RS08465 0.30 -0.9 1,902,347 - LRK53_RS08465 0.30 -0.2 1,902,347 - LRK53_RS08465 0.30 +0.1 1,902,347 - LRK53_RS08465 0.30 -2.9 1,902,347 - LRK53_RS08465 0.30 -0.9 1,902,347 - LRK53_RS08465 0.30 -2.4 1,902,347 - LRK53_RS08465 0.30 -1.0 1,902,347 - LRK53_RS08465 0.30 +0.0 1,902,347 - LRK53_RS08465 0.30 -0.3 1,902,347 - LRK53_RS08465 0.30 +1.9 1,902,347 - LRK53_RS08465 0.30 -0.7 1,902,347 - LRK53_RS08465 0.30 -1.4 1,902,347 - LRK53_RS08465 0.30 -0.5 1,902,347 - LRK53_RS08465 0.30 -1.2 1,902,347 - LRK53_RS08465 0.30 +1.7 1,902,571 + LRK53_RS08465 0.51 -0.5 1,902,571 + LRK53_RS08465 0.51 -0.5 1,902,571 + LRK53_RS08465 0.51 +1.1 1,902,571 + LRK53_RS08465 0.51 -2.0 1,902,571 + LRK53_RS08465 0.51 -1.1 1,902,571 + LRK53_RS08465 0.51 -0.5 1,902,571 + LRK53_RS08465 0.51 -0.3 1,902,571 + LRK53_RS08465 0.51 +0.3 1,902,571 + LRK53_RS08465 0.51 -0.5 1,902,571 + LRK53_RS08465 0.51 -0.7 1,902,571 + LRK53_RS08465 0.51 -0.3 1,902,572 - LRK53_RS08465 0.51 -0.7 1,902,572 - LRK53_RS08465 0.51 -1.1 1,902,572 - LRK53_RS08465 0.51 -0.5 1,902,572 - LRK53_RS08465 0.51 -0.0 1,902,572 - LRK53_RS08465 0.51 -0.1 1,902,638 + LRK53_RS08465 0.57 -1.8 1,902,638 + LRK53_RS08465 0.57 -1.6 1,902,638 + LRK53_RS08465 0.57 -1.0 1,902,639 - LRK53_RS08465 0.57 -0.1 1,902,639 - LRK53_RS08465 0.57 +0.4 1,902,639 - LRK53_RS08465 0.57 -2.0 1,902,639 - LRK53_RS08465 0.57 -2.5 1,903,061 + -1.7 1,903,061 + -0.1 1,903,061 + -1.7 1,903,062 - +2.1 1,903,062 - -0.9 1,903,062 - -0.9 1,903,062 - -0.2 1,903,062 - +0.2 1,903,173 + -0.8 1,903,173 + -1.0 1,903,173 + -1.4 1,903,174 - -1.6 1,903,174 - -0.3 1,903,183 + -1.2 1,903,183 + -0.5 1,903,183 + +0.4 1,903,183 + -0.1 1,903,184 - -1.1 1,903,184 - -1.1 1,903,184 - -1.6 1,903,434 + LRK53_RS08470 0.32 +0.2 1,903,435 - LRK53_RS08470 0.32 +0.1 1,903,435 - LRK53_RS08470 0.32 -0.7 1,903,435 - LRK53_RS08470 0.32 -0.1 1,903,435 - LRK53_RS08470 0.32 -1.1 1,903,926 + LRK53_RS08470 0.78 +0.1 1,903,926 + LRK53_RS08470 0.78 -0.8 1,903,927 - LRK53_RS08470 0.78 -1.7 1,904,100 - -1.2 1,904,100 - +0.6 1,904,213 + +1.3 1,904,214 - +0.7 1,904,579 + LRK53_RS08475 0.71 -1.9 1,904,579 + LRK53_RS08475 0.71 -0.7 1,904,579 + LRK53_RS08475 0.71 +0.1 1,904,579 + LRK53_RS08475 0.71 -0.2 1,904,580 - LRK53_RS08475 0.71 -0.5 1,904,580 - LRK53_RS08475 0.71 +0.0 1,904,580 - LRK53_RS08475 0.71 -0.3 1,904,580 - LRK53_RS08475 0.71 +0.8 1,904,594 + LRK53_RS08475 0.73 -1.6 1,904,594 + LRK53_RS08475 0.73 -1.8 1,904,594 + LRK53_RS08475 0.73 +0.1 1,904,594 + LRK53_RS08475 0.73 -0.3 1,904,594 + LRK53_RS08475 0.73 -0.7 1,904,594 + LRK53_RS08475 0.73 -1.4 1,904,594 + LRK53_RS08475 0.73 -1.1 1,904,594 + LRK53_RS08475 0.73 -1.0 1,904,594 + LRK53_RS08475 0.73 +0.3 1,904,594 + LRK53_RS08475 0.73 -0.9 1,904,595 - LRK53_RS08475 0.73 +0.3 1,904,595 - LRK53_RS08475 0.73 +1.1 1,904,595 - LRK53_RS08475 0.73 -0.7 1,904,595 - LRK53_RS08475 0.73 -1.1 1,904,595 - LRK53_RS08475 0.73 +0.2 1,904,595 - LRK53_RS08475 0.73 -1.2 1,904,595 - LRK53_RS08475 0.73 +0.5 1,904,595 - LRK53_RS08475 0.73 +0.1 1,904,601 + LRK53_RS08475 0.74 -1.7 1,904,748 + -1.9 1,904,748 + -0.0 1,904,748 + +2.7 1,904,749 - +0.2 1,904,749 - -0.4 1,904,749 - -1.1 1,904,749 - -1.0 1,904,749 - -0.5 1,904,754 + -0.3 1,904,754 + -1.1 1,904,754 + -1.1 1,904,754 + -0.7 1,904,754 + +0.1 1,904,754 + -0.3 1,904,754 + -2.5 1,904,754 + -0.9 1,904,754 + -0.9 1,904,754 + -0.3 1,904,754 + +0.8 1,904,754 + +0.6 1,904,754 + -1.9 1,904,754 + -0.7 1,904,755 - +2.1 1,904,755 - +0.5 1,904,755 - +0.1 1,904,755 - -1.3 1,904,755 - +0.9 1,904,755 - -1.0 1,904,755 - -1.2 1,904,755 - -0.9 1,904,755 - -0.6 1,904,755 - -0.3 1,904,755 - -1.2 1,904,755 - -2.9 1,904,755 - -0.5 1,904,755 - -0.1 1,904,755 - -0.9 1,904,755 - -0.2 1,904,755 - +0.9 1,904,755 - -0.1 1,904,755 - -0.5 1,904,755 - +0.5 1,904,755 - -1.7 1,904,822 + -0.7 1,904,822 + -0.6 1,904,822 + -0.9 1,904,822 + -0.9 1,904,823 - -1.5 1,904,823 - -1.4 1,904,823 - -0.8 1,904,901 + +0.9 1,904,901 + -1.0 1,904,901 + +1.3 1,904,901 + +1.2 1,904,901 + -1.7 1,904,901 + +0.8 1,904,902 - +0.3 1,904,902 - -3.3 1,904,902 - +0.7 1,904,902 - +0.1 1,904,902 - -1.0 1,904,911 + -1.7 1,904,911 + -0.3 1,904,911 + -1.7 1,904,911 + +0.4 1,904,967 + -1.0 1,904,985 + LRK53_RS08480 0.12 -1.2 1,904,985 + LRK53_RS08480 0.12 -0.7 1,904,985 + LRK53_RS08480 0.12 +2.2 1,904,985 + LRK53_RS08480 0.12 +1.2 1,904,986 - LRK53_RS08480 0.12 +1.2 1,904,986 - LRK53_RS08480 0.12 -0.8 1,904,986 - LRK53_RS08480 0.12 -0.7 1,905,018 + LRK53_RS08480 0.17 +0.1 1,905,018 + LRK53_RS08480 0.17 -0.6 1,905,019 - LRK53_RS08480 0.17 +0.5 1,905,148 + LRK53_RS08480 0.35 -1.0
Or see this region's nucleotide sequence