Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS07280

Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS07275 and LRK53_RS07280 are separated by 156 nucleotidesLRK53_RS07280 and LRK53_RS07285 are separated by 20 nucleotidesLRK53_RS07285 and LRK53_RS07290 overlap by 41 nucleotides LRK53_RS07275: LRK53_RS07275 - zinc metallopeptidase, at 1,634,248 to 1,635,105 _RS07275 LRK53_RS07280: LRK53_RS07280 - YkgJ family cysteine cluster protein, at 1,635,262 to 1,635,648 _RS07280 LRK53_RS07285: LRK53_RS07285 - IS630 family transposase, at 1,635,669 to 1,636,250 _RS07285 LRK53_RS07290: LRK53_RS07290 - winged helix-turn-helix domain-containing protein, at 1,636,210 to 1,636,734 _RS07290 Position (kb) 1635 1636Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.629 kb on + strand, within LRK53_RS07275at 1634.629 kb on + strand, within LRK53_RS07275at 1634.629 kb on + strand, within LRK53_RS07275at 1634.653 kb on + strand, within LRK53_RS07275at 1634.653 kb on + strand, within LRK53_RS07275at 1634.653 kb on + strand, within LRK53_RS07275at 1634.653 kb on + strand, within LRK53_RS07275at 1634.653 kb on + strand, within LRK53_RS07275at 1634.653 kb on + strand, within LRK53_RS07275at 1634.653 kb on + strand, within LRK53_RS07275at 1634.653 kb on + strand, within LRK53_RS07275at 1634.653 kb on + strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.722 kb on + strand, within LRK53_RS07275at 1634.722 kb on + strand, within LRK53_RS07275at 1634.722 kb on + strand, within LRK53_RS07275at 1634.722 kb on + strand, within LRK53_RS07275at 1634.722 kb on + strand, within LRK53_RS07275at 1634.723 kb on - strand, within LRK53_RS07275at 1634.723 kb on - strand, within LRK53_RS07275at 1634.723 kb on - strand, within LRK53_RS07275at 1634.863 kb on + strand, within LRK53_RS07275at 1634.863 kb on + strand, within LRK53_RS07275at 1635.003 kb on + strand, within LRK53_RS07275at 1635.003 kb on + strand, within LRK53_RS07275at 1635.004 kb on - strand, within LRK53_RS07275at 1635.004 kb on - strand, within LRK53_RS07275at 1635.004 kb on - strand, within LRK53_RS07275at 1635.004 kb on - strand, within LRK53_RS07275at 1635.004 kb on - strand, within LRK53_RS07275at 1635.218 kb on - strandat 1635.301 kb on + strand, within LRK53_RS07280at 1635.302 kb on - strand, within LRK53_RS07280at 1635.478 kb on + strand, within LRK53_RS07280at 1635.478 kb on + strand, within LRK53_RS07280at 1635.479 kb on - strand, within LRK53_RS07280at 1635.479 kb on - strand, within LRK53_RS07280at 1635.497 kb on + strand, within LRK53_RS07280at 1635.690 kb on - strandat 1635.690 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM
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1,634,548 + LRK53_RS07275 0.35 -1.8
1,634,548 + LRK53_RS07275 0.35 -1.0
1,634,548 + LRK53_RS07275 0.35 +0.7
1,634,548 + LRK53_RS07275 0.35 +1.2
1,634,548 + LRK53_RS07275 0.35 -0.3
1,634,548 + LRK53_RS07275 0.35 -1.3
1,634,548 + LRK53_RS07275 0.35 -1.2
1,634,548 + LRK53_RS07275 0.35 -0.2
1,634,548 + LRK53_RS07275 0.35 -0.3
1,634,548 + LRK53_RS07275 0.35 -1.6
1,634,548 + LRK53_RS07275 0.35 -0.7
1,634,548 + LRK53_RS07275 0.35 -0.0
1,634,548 + LRK53_RS07275 0.35 +0.2
1,634,548 + LRK53_RS07275 0.35 -2.0
1,634,549 - LRK53_RS07275 0.35 +1.1
1,634,549 - LRK53_RS07275 0.35 -0.6
1,634,549 - LRK53_RS07275 0.35 +2.0
1,634,549 - LRK53_RS07275 0.35 -0.6
1,634,549 - LRK53_RS07275 0.35 -0.6
1,634,549 - LRK53_RS07275 0.35 -1.2
1,634,549 - LRK53_RS07275 0.35 -0.4
1,634,549 - LRK53_RS07275 0.35 -1.4
1,634,549 - LRK53_RS07275 0.35 -0.3
1,634,549 - LRK53_RS07275 0.35 +0.4
1,634,549 - LRK53_RS07275 0.35 -1.5
1,634,549 - LRK53_RS07275 0.35 -1.0
1,634,549 - LRK53_RS07275 0.35 -0.0
1,634,549 - LRK53_RS07275 0.35 -1.5
1,634,549 - LRK53_RS07275 0.35 +0.4
1,634,549 - LRK53_RS07275 0.35 +1.9
1,634,629 + LRK53_RS07275 0.44 +0.6
1,634,629 + LRK53_RS07275 0.44 -0.0
1,634,629 + LRK53_RS07275 0.44 +0.3
1,634,653 + LRK53_RS07275 0.47 -1.2
1,634,653 + LRK53_RS07275 0.47 -0.6
1,634,653 + LRK53_RS07275 0.47 +0.9
1,634,653 + LRK53_RS07275 0.47 +0.1
1,634,653 + LRK53_RS07275 0.47 -0.3
1,634,653 + LRK53_RS07275 0.47 +1.7
1,634,653 + LRK53_RS07275 0.47 -1.6
1,634,653 + LRK53_RS07275 0.47 +0.7
1,634,653 + LRK53_RS07275 0.47 -0.9
1,634,654 - LRK53_RS07275 0.47 -0.6
1,634,654 - LRK53_RS07275 0.47 -0.4
1,634,654 - LRK53_RS07275 0.47 -1.9
1,634,654 - LRK53_RS07275 0.47 -0.8
1,634,654 - LRK53_RS07275 0.47 -1.8
1,634,654 - LRK53_RS07275 0.47 -2.0
1,634,654 - LRK53_RS07275 0.47 -1.0
1,634,654 - LRK53_RS07275 0.47 -1.6
1,634,654 - LRK53_RS07275 0.47 -0.9
1,634,654 - LRK53_RS07275 0.47 -0.4
1,634,722 + LRK53_RS07275 0.55 -1.1
1,634,722 + LRK53_RS07275 0.55 -0.5
1,634,722 + LRK53_RS07275 0.55 +0.3
1,634,722 + LRK53_RS07275 0.55 -1.2
1,634,722 + LRK53_RS07275 0.55 +0.7
1,634,723 - LRK53_RS07275 0.55 +1.1
1,634,723 - LRK53_RS07275 0.55 +0.7
1,634,723 - LRK53_RS07275 0.55 +0.6
1,634,863 + LRK53_RS07275 0.72 -0.0
1,634,863 + LRK53_RS07275 0.72 -1.7
1,635,003 + LRK53_RS07275 0.88 -3.1
1,635,003 + LRK53_RS07275 0.88 -0.1
1,635,004 - LRK53_RS07275 0.88 -1.3
1,635,004 - LRK53_RS07275 0.88 +0.1
1,635,004 - LRK53_RS07275 0.88 -1.9
1,635,004 - LRK53_RS07275 0.88 -1.6
1,635,004 - LRK53_RS07275 0.88 +0.9
1,635,218 - -1.1
1,635,301 + LRK53_RS07280 0.10 -0.6
1,635,302 - LRK53_RS07280 0.10 -0.7
1,635,478 + LRK53_RS07280 0.56 -1.7
1,635,478 + LRK53_RS07280 0.56 -1.5
1,635,479 - LRK53_RS07280 0.56 +0.1
1,635,479 - LRK53_RS07280 0.56 -3.2
1,635,497 + LRK53_RS07280 0.61 +0.4
1,635,690 - -0.5
1,635,690 - -0.3

Or see this region's nucleotide sequence